Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 100.0
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 2.1e-25 118.2 59 100.0
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 2.3e-24 114.8 59 94.9
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 5.1e-24 113.6 59 93.2
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 5.1e-24 113.6 59 93.2
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 5.1e-24 113.6 59 94.9
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 6.7e-24 113.2 59 94.9
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 6.7e-24 113.2 59 94.9
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-23 112.5 59 93.2
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 1.1e-23 112.5 59 93.2
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 1.5e-23 112.1 59 93.2
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 7.4e-23 109.8 59 91.5
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 89.8
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 89.8
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 89.8
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 89.8
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 89.8
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 1.6e-22 108.6 59 89.8
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 6.3e-22 106.7 59 88.1
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.5e-20 102.1 59 89.8
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.5e-20 102.1 59 89.8
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 1.5e-20 102.1 59 89.8
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 1.5e-20 102.1 59 89.8
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 5.9e-20 100.1 59 84.7
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 1.0e-19 99.4 59 83.1
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 1.3e-19 99.0 59 83.1
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 1.3e-19 99.0 59 84.7
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.3e-19 99.0 59 84.7
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.3e-19 99.0 59 84.7
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.3e-19 99.0 59 84.7
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.3e-19 99.0 59 84.7
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.7e-19 98.6 59 83.1
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 1.7e-19 98.6 59 84.7
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 3.8e-19 97.4 59 83.1
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 3.8e-19 97.4 59 83.1
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 3.8e-19 97.4 59 83.1
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 3.8e-19 97.4 59 83.1
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 3.8e-19 97.4 60 81.7
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 5.0e-19 97.1 59 83.1
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 5.0e-19 97.1 59 83.1
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 5.0e-19 97.1 60 83.3
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 5.0e-19 97.1 60 83.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 8.5e-19 96.3 59 79.7
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.1e-18 95.9 59 81.4
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-18 95.9 59 81.4
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.1e-18 95.9 59 81.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 1.1e-18 95.9 56 83.9
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.4e-18 95.5 59 81.4
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.4e-18 95.5 59 81.4
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.4e-18 95.5 59 79.7
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-18 95.1 57 82.5
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 2.5e-18 94.7 59 79.7
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 3.2e-18 94.4 60 80.0
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 4.2e-18 94.0 60 81.7
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 5.5e-18 93.6 59 78.0
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 7.2e-18 93.2 59 79.7
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 7.2e-18 93.2 56 80.4
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 7.2e-18 93.2 56 80.4
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 7.2e-18 93.2 60 80.0
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.2e-17 92.4 59 81.4
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.2e-17 92.4 58 79.3
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.6e-17 92.0 60 83.3
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 2.1e-17 91.7 58 77.6
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 2.1e-17 91.7 54 88.9
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.1e-17 91.7 58 77.6
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 2.7e-17 91.3 56 80.4
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 4.6e-17 90.5 56 80.4
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 7.9e-17 89.7 50 88.0
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 78.6
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.4e-16 89.0 56 78.6
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 3.9e-16 87.4 56 76.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 6.7e-16 86.7 50 82.0
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 6.7e-16 86.7 59 76.3
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 72.1
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 72.1
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.9e-15 85.1 61 72.1
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.9e-15 85.1 61 72.1
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.5e-15 84.7 61 73.8
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 2.5e-15 84.7 61 72.1
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 2.5e-15 84.7 61 72.1
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 4.3e-15 84.0 61 72.1
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 4.3e-15 84.0 61 72.1
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 4.3e-15 84.0 61 72.1
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 7.4e-15 83.2 61 70.5
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 3.7e-14 80.9 61 68.9
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 3.7e-14 80.9 61 68.9
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 3.7e-14 80.9 61 68.9
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 3.7e-14 80.9 61 68.9
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 4.8e-14 80.5 61 67.2
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 6.3e-14 80.1 61 67.2
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.4e-13 78.2 57 66.7
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 3.1e-13 77.8 56 67.9
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 4.1e-13 77.4 57 71.9
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 5.3e-13 77.0 55 69.1
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.9e-13 76.6 47 80.9
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 5.9e-12 73.6 49 67.3
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 5.9e-12 73.6 59 67.8
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 1.3e-11 72.4 59 67.8
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.3e-11 72.4 51 68.6
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.2e-11 71.6 59 67.8
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 2.2e-11 71.6 59 62.7
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 3.8e-11 70.9 51 68.6
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 8.5e-11 69.7 49 71.4
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 1.1e-10 69.3 59 59.3
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 7.2e-10 66.6 56 58.9
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.2e-09 65.9 51 62.7
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.6e-09 65.5 55 60.0
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 2.1e-09 65.1 53 62.3
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 2.1e-09 65.1 48 66.7
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 3.6e-09 64.3 50 62.0
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 4.7e-09 63.9 55 61.8
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 7.9e-09 63.2 48 64.6
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 7.9e-09 63.2 48 64.6
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 7.9e-09 63.2 56 60.7
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.0e-08 62.8 47 68.1
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.4e-08 62.4 49 61.2
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.8e-08 62.0 53 60.4
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 3.9e-08 60.8 52 57.7
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 6.7e-08 60.1 51 58.8
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 1.1e-07 59.3 49 61.2
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 1.5e-07 58.9 55 50.9
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.3e-06 55.8 48 54.2
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 2.2e-06 55.1 45 60.0
Aqoxy6G00317 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 6.3e-06 53.5 38 71.1


User provided reference genes

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