Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.5e-106 389.4 188 100.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 7.2e-104 380.6 188 97.3
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 86.2
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 85.1
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 84.0
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 83.5
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 84.0
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 84.0
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.5
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 83.5
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 83.5
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 84.0
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 83.0
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.0
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 83.5
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 83.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 84.0
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 84.6
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 83.0
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 81.4
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 5.5e-88 327.8 186 82.3
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 84.0
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 84.0
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 84.0
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 81.9
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 82.4
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 81.9
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.9
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 84.0
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 84.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.2e-87 326.6 186 82.3
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.4
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 84.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 84.0
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 81.4
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.5
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 83.5
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.0
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.5
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.5
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.5
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 81.9
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 3.6e-87 325.1 187 81.8
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 6.1e-87 324.3 186 81.7
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.3
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.3
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 186 81.2
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.0e-86 323.6 186 81.2
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.9
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 83.0
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 82.4
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 3.9e-86 321.6 190 83.2
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 3.9e-86 321.6 190 83.2
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.4
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 80.3
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 81.9
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 83.0
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 8.8e-86 320.5 186 80.6
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 81.4
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 81.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.5e-85 319.7 188 81.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 81.9
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 81.9
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.9
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 82.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 80.9
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 80.9
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 81.9
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 81.9
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 79.3
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 81.4
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 80.9
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 80.9
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 78.7
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 80.9
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.3
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 81.9
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.8e-84 315.5 179 82.7
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 79.3
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 6.3e-84 314.3 188 80.3
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 80.9
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 80.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 78.2
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 80.3
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 79.8
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.8e-83 312.8 189 80.4
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 79.3
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 78.7
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 79.3
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 78.7
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 79.3
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 79.3
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 188 79.3
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 78.7
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.2e-82 310.1 188 79.3
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 77.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 2.6e-82 308.9 188 79.3
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 78.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 3.5e-82 308.5 188 77.7
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 3.5e-82 308.5 189 79.4
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.0e-81 307.0 189 78.8
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.0e-81 307.0 180 81.7
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 3.8e-81 305.1 189 78.3
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 6.5e-81 304.3 188 77.1
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.5e-80 303.1 189 77.8
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 3.2e-80 302.0 170 82.4
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 79.8
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 7.2e-80 300.8 189 77.8
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.2e-79 300.1 188 76.6
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.7e-79 298.9 188 76.6
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.6e-79 298.5 188 74.5
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.2e-78 294.7 174 80.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 9.7e-77 290.4 188 73.9
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.8e-76 288.9 180 76.1
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.1e-75 287.0 188 73.4
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 5.0e-73 278.1 188 72.3
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.5e-72 276.6 190 72.1
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 9.4e-72 273.9 190 70.5
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.8e-70 269.6 188 70.2
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 4.0e-70 268.5 188 67.6
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.2e-69 266.9 188 66.0
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 1.2e-69 266.9 188 67.0
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.6e-69 265.8 188 67.6
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 2.6e-69 265.8 188 67.6
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.4e-67 260.0 189 66.1
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 5.4e-67 258.1 188 69.7
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.6e-66 256.5 188 69.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 3.5e-66 255.4 187 65.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.5e-66 255.0 178 70.2
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-65 253.8 176 72.2
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 1.0e-65 253.8 187 65.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.7e-65 253.1 178 69.1
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.7e-65 253.1 187 64.7
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.9e-64 249.6 188 68.1
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 4.0e-62 241.9 182 66.5
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 4.1e-59 231.9 188 58.0
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 5.4e-59 231.5 179 63.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.0e-57 227.3 165 70.9
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 6.4e-52 208.0 188 58.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 4.7e-47 191.8 121 74.4
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 6.8e-46 188.0 115 77.4
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 4.4e-45 185.3 187 49.2
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 5.4e-43 178.3 109 78.9
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 7.0e-43 177.9 175 56.0
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 4.3e-40 168.7 123 71.5
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-39 166.4 188 50.5
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 2.2e-36 156.4 139 55.4
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.4e-35 152.9 85 84.7
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.4e-27 127.1 77 76.6
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 3.0e-25 119.4 92 68.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.2e-21 107.5 64 75.0
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 2.3e-09 66.6 35 88.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 6.2e-07 58.5 39 66.7


User provided reference genes

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