Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1506.9 765 100.0
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1250.0 765 82.5
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1249.2 760 82.6
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1235.7 776 80.9
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1217.2 766 79.6
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1208.4 760 80.4
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1208.0 752 81.6
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1207.2 753 81.7
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1203.3 755 80.4
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1197.2 766 80.0
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1195.3 779 78.9
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1188.7 766 79.1
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1185.6 750 80.7
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1173.3 771 78.9
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1170.2 759 77.9
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1165.2 727 80.5
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1162.5 765 77.1
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1160.2 765 77.0
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1159.8 764 77.6
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1159.4 756 79.5
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1158.7 768 78.0
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1158.7 761 77.5
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1157.5 761 77.5
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1155.2 755 78.9
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1154.8 756 78.6
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1151.0 768 76.6
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1149.0 768 75.8
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1147.9 775 75.6
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1146.0 764 76.7
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1140.6 762 76.4
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 0.0e+00 1139.4 767 76.3
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1139.0 761 77.7
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1136.3 772 75.0
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1135.2 782 74.9
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1134.0 752 76.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1129.0 782 75.6
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1128.2 765 74.9
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 760 77.1
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 780 74.4
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1122.8 760 77.0
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1122.1 743 77.0
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1121.7 760 75.9
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1114.8 749 74.9
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 0.0e+00 1111.7 770 73.1
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1109.0 803 73.3
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 0.0e+00 1105.9 752 75.4
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 759 74.0
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1099.0 771 73.2
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 758 74.0
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 0.0e+00 1092.0 753 72.9
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1090.9 763 72.6
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 0.0e+00 1082.0 771 72.5
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1077.0 782 71.9
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 6.3e-308 1060.4 940 63.4
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 8.3e-308 1060.1 758 72.6
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.8e-307 1058.9 755 72.8
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.3e-305 1052.7 736 73.2
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.5e-301 1039.3 764 70.7
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 4.4e-301 1037.7 755 70.6
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.3e-300 1036.2 771 70.4
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 3.5e-298 1028.1 753 70.1
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 4.5e-298 1027.7 731 73.1
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 1.0e-297 1026.5 753 69.9
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 3.3e-296 1021.5 753 69.2
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.3e-294 1015.4 753 68.8
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 2.3e-294 1015.4 761 68.9
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.2e-293 1013.1 759 70.2
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 3.4e-293 1011.5 753 68.4
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 3.4e-293 1011.5 753 68.4
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 1.1e-291 1006.5 753 68.9
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 2.7e-290 1001.9 777 66.7
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 7.8e-290 1000.3 753 68.0
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 4.3e-288 994.6 762 69.9
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 8.0e-287 990.3 677 75.6
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.0e-287 990.3 755 69.3
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 1.8e-286 989.2 755 67.3
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 8.3e-284 980.3 753 67.1
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.0e-281 973.4 749 66.2
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 8.6e-281 970.3 724 67.3
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 3.3e-280 968.4 529 88.7
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 4.3e-280 968.0 510 91.2
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.4e-278 963.0 753 65.9
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 2.3e-278 962.2 751 67.1
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 8.9e-278 960.3 742 67.5
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.4e-275 953.0 754 66.7
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 7.8e-274 947.2 744 66.7
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.7e-273 946.0 640 77.2
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.2e-271 939.9 512 88.3
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 7.8e-258 894.0 766 64.1
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.0e-257 893.6 700 65.7
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.1e-254 883.6 762 62.2
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.0e-253 879.4 753 63.3
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.4e-253 878.6 754 62.7
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 8.7e-249 864.0 750 62.5
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.5e-237 826.6 768 57.6
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 9.3e-235 817.4 825 53.0
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 6.9e-230 801.2 648 63.3
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 4.6e-226 788.5 837 52.1
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 2.5e-211 739.6 756 51.6
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 2.0e-208 729.9 750 55.2
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 4.2e-203 712.2 746 54.0
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.0e-201 707.6 746 53.8
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.5e-200 701.4 746 53.5
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.3e-199 698.4 746 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 6.1e-194 681.8 716 51.5
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 8.0e-194 681.4 757 52.6
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.2e-186 657.5 701 49.6
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.2e-178 630.9 334 90.1
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.2e-158 563.1 456 67.3
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 9.6e-131 471.9 409 60.6
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 8.1e-122 442.2 449 54.8
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.4e-105 387.5 224 83.0
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 7.4e-99 365.9 240 75.0
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.1e-89 335.5 182 87.9
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 7.7e-88 329.3 590 33.1
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 1.3e-87 328.6 693 32.8
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 4.8e-82 310.1 240 72.9
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.8e-81 308.1 240 72.5
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 5.5e-78 296.6 515 34.4
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 4.0e-76 290.4 281 60.9
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 5.0e-71 273.5 367 47.4
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 5.9e-56 223.4 130 80.0
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 7.8e-56 223.0 170 65.3
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.1e-53 214.9 216 61.1
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.5e-51 208.8 132 78.8
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 4.6e-48 197.2 115 84.3
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 8.6e-47 193.0 134 70.9
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 6.2e-45 186.8 181 61.9
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.7e-37 160.6 156 61.5
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 6.6e-31 140.2 148 52.0
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.2e-29 136.0 94 70.2
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.9e-22 112.1 128 55.5
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.5e-19 100.9 55 81.8
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 9.9e-19 99.8 66 75.8
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 1.8e-15 89.0 70 60.0
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 2.3e-15 88.6 148 40.5
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 2.1e-13 82.0 530 20.2
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.4e-12 79.3 86 45.3
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 5.8e-11 73.9 468 20.1
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.3e-10 72.8 475 20.4
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 3.8e-10 71.2 496 19.8
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 9.3e-09 66.6 108 38.9
EL10Ac8g19790 Beta vulgaris HOM05D002279 ORTHO05D002644 1.2e-08 66.2 465 20.6
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.2e-08 66.2 342 22.2
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 1.6e-08 65.9 59 52.5
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.0e-07 63.2 116 37.1
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.8e-07 62.4 59 52.5
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 2.3e-07 62.0 350 22.3
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 3.0e-07 61.6 81 43.2
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 3.9e-07 61.2 340 20.6
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 6.7e-07 60.5 115 37.4
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 6.7e-07 60.5 115 37.4
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 8.7e-07 60.1 116 36.2
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 1.1e-06 59.7 476 20.4
Aqoxy1G01865 Aquilegia oxysepala HOM05D001971 ORTHO05D003057 7.4e-06 57.0 189 25.4
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 7.4e-06 57.0 460 18.5
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 9.6e-06 56.6 342 21.1


User provided reference genes

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