Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 4.1e-150 534.6 258 100.0
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.5e-104 383.3 247 73.7
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.1e-102 375.2 247 73.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.3e-100 369.4 242 74.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.0e-100 369.0 242 73.6
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 5.0e-100 368.2 249 71.5
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.9e-99 366.3 270 67.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 7.3e-99 364.4 242 72.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 9.5e-99 364.0 242 71.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.6e-98 362.1 241 72.2
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.8e-97 359.8 242 72.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.3e-97 359.4 243 73.3
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 5.2e-97 358.2 247 71.7
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.2e-96 357.1 246 69.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.5e-96 356.7 242 71.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.6e-96 355.9 242 71.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.4e-96 355.5 242 70.7
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.4e-96 355.5 242 70.7
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.4e-96 355.1 245 70.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.4e-96 355.1 242 70.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 5.8e-96 354.8 284 64.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 7.5e-96 354.4 242 71.1
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-95 353.6 243 72.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.7e-95 353.2 242 69.8
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.9e-95 352.4 242 70.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.7e-95 352.1 242 70.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 6.4e-95 351.3 246 67.5
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 8.3e-95 350.9 242 69.4
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-94 350.5 242 70.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.4e-94 350.1 242 70.2
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.9e-94 349.7 242 71.5
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 4.1e-94 348.6 242 69.8
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 7.1e-94 347.8 242 70.2
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 7.1e-94 347.8 240 68.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 9.2e-94 347.4 242 69.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.2e-94 347.4 242 69.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-93 347.1 242 67.8
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.6e-93 346.7 242 68.6
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.1e-93 346.3 242 69.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.1e-93 346.3 243 69.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.7e-93 345.9 242 68.2
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.5e-93 345.5 221 74.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.5e-93 345.5 269 64.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.8e-93 344.4 242 66.9
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.0e-92 344.0 242 68.2
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.7e-92 343.2 243 68.3
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-92 342.8 215 75.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 3.9e-92 342.0 242 68.2
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.9e-92 342.0 207 77.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.9e-92 342.0 242 70.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.1e-92 341.7 243 68.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 5.1e-92 341.7 231 70.1
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 5.1e-92 341.7 217 72.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.5e-91 340.1 231 68.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-91 340.1 208 78.4
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.9e-91 339.7 207 75.8
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.9e-91 339.7 215 72.1
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.5e-91 339.3 220 71.8
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.5e-91 339.3 211 73.5
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.3e-91 339.0 243 67.5
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.3e-91 339.0 211 73.0
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 5.6e-91 338.2 232 68.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 7.3e-91 337.8 222 69.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 7.3e-91 337.8 261 64.8
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 9.5e-91 337.4 250 66.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 9.5e-91 337.4 208 77.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 9.5e-91 337.4 243 67.5
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 9.5e-91 337.4 242 69.4
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-90 337.0 232 69.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-90 337.0 232 69.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.6e-90 336.7 242 66.5
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.6e-90 336.7 242 66.5
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-90 336.3 220 70.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.8e-90 335.9 231 68.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.6e-90 335.5 215 73.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 4.7e-90 335.1 215 71.2
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 8.1e-90 334.3 209 73.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.4e-89 333.6 233 68.2
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.4e-89 333.6 233 68.2
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.4e-89 333.6 242 66.9
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.4e-89 333.6 208 73.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.3e-89 332.8 211 73.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.3e-89 332.8 209 75.1
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.3e-89 332.8 242 65.3
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.1e-89 332.4 240 68.8
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.0e-89 332.0 224 71.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.2e-89 331.6 243 66.3
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.8e-89 331.3 242 66.5
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 6.8e-89 331.3 243 65.4
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.8e-89 331.3 239 68.6
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-88 330.5 207 74.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.5e-88 330.1 250 64.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.5e-88 330.1 249 65.1
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.6e-88 329.3 242 64.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.6e-88 329.3 242 66.1
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.4e-88 328.9 242 65.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 3.4e-88 328.9 247 66.8
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.4e-88 328.6 206 76.7
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.4e-88 328.6 242 63.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-87 327.0 244 65.2
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.7e-87 326.6 242 64.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-87 326.2 207 73.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.9e-87 325.9 244 66.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.9e-87 325.9 209 74.6
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.7e-87 325.5 242 68.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-86 323.6 250 64.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.4e-86 323.6 243 66.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.4e-86 323.6 239 64.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.9e-86 323.2 243 65.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.4e-86 322.8 209 73.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.2e-86 322.4 238 66.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.1e-86 322.0 243 65.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.1e-85 319.7 214 73.8
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 6.0e-85 318.2 191 77.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.0e-84 317.4 209 72.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.0e-84 317.4 242 65.3
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.3e-84 316.2 218 70.2
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 5.1e-84 315.1 243 64.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 6.6e-84 314.7 216 71.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-83 313.9 242 64.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.3e-83 312.4 193 76.2
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.7e-82 308.5 213 67.1
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.1e-81 307.4 213 68.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.0e-81 305.4 226 64.2
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.5e-80 303.5 213 68.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.4e-80 302.4 242 63.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.8e-80 301.6 247 59.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.9e-79 299.3 298 53.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.1e-78 297.4 206 68.9
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.4e-78 297.0 208 66.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-73 280.8 195 69.2
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-72 276.9 196 68.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.9e-69 264.6 164 75.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.4e-65 253.8 165 70.3
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 3.1e-65 252.7 149 78.5
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 6.4e-63 245.0 196 62.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.0e-60 236.1 207 59.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-59 234.2 149 72.5
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 7.4e-59 231.5 238 50.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.4e-54 217.2 162 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-50 204.1 292 42.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-49 200.3 151 64.2
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.1e-49 199.1 178 55.1
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.2e-45 187.6 231 43.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 3.5e-45 186.0 108 80.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.5e-45 186.0 108 80.6
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.0e-44 183.0 109 77.1
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-42 175.6 111 73.9
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.1e-33 147.9 87 78.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.2e-30 136.0 150 48.7
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 3.6e-29 132.9 198 41.9
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.8e-23 112.8 71 76.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 9.7e-19 98.2 184 34.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.7e-18 96.3 84 57.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.2e-16 91.3 235 32.3
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.0e-15 88.2 57 68.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.7e-15 87.4 137 32.1
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.5e-15 85.5 47 85.1
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.7e-13 80.1 62 62.9
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-12 77.8 49 73.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.8e-12 77.4 46 78.3
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 5.4e-09 65.9 88 42.0
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 6.5e-07 58.9 57 49.1


User provided reference genes

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