Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 7.1e-96 354.0 185 100.0
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.2e-71 273.5 188 78.2
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 3.9e-70 268.5 192 76.6
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 5.1e-70 268.1 188 78.7
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 3.3e-69 265.4 192 74.5
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 3.3e-69 265.4 192 75.5
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 3.3e-69 265.4 192 75.5
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 9.6e-69 263.8 191 74.3
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 1.4e-67 260.0 191 73.8
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 6.9e-67 257.7 191 74.3
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 5.8e-66 254.6 186 73.1
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 6.4e-65 251.1 192 72.4
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 6.4e-65 251.1 190 71.1
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.4e-64 250.0 190 72.1
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.4e-64 250.0 190 72.1
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 1.4e-64 250.0 193 72.0
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 7.1e-64 247.7 189 70.4
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 9.3e-64 247.3 190 70.0
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 1.6e-63 246.5 192 72.4
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 1.6e-63 246.5 192 72.4
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 2.1e-63 246.1 191 73.8
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 4.6e-63 245.0 189 69.8
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 1.0e-62 243.8 190 69.5
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 1.3e-62 243.4 191 69.6
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.3e-62 243.4 188 74.5
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 1.8e-62 243.0 190 70.5
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 3.9e-62 241.9 191 72.3
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 3.9e-62 241.9 192 70.8
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 8.7e-62 240.7 166 77.7
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 8.7e-62 240.7 191 70.2
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 1.1e-61 240.4 187 71.7
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 2.5e-61 239.2 195 68.2
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 5.6e-61 238.0 184 72.8
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 6.2e-60 234.6 179 73.2
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 8.1e-60 234.2 192 69.8
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.4e-59 233.4 182 71.4
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 6.9e-59 231.1 194 69.6
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 6.9e-59 231.1 240 55.8
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 1.2e-58 230.3 182 71.4
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.5e-58 229.9 193 70.5
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 2.6e-58 229.2 193 66.8
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 3.4e-58 228.8 193 66.8
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 7.6e-58 227.6 196 64.8
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.3e-57 226.9 193 66.3
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 2.9e-57 225.7 190 67.4
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 3.8e-57 225.3 194 66.5
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 4.9e-57 224.9 193 68.9
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.1e-56 223.8 188 64.9
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.4e-56 223.4 193 67.9
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 3.2e-56 222.2 193 67.9
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 7.1e-56 221.1 194 66.0
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.2e-55 220.3 193 66.8
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 2.1e-55 219.5 194 64.4
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 2.7e-55 219.2 193 67.4
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 1.8e-54 216.5 169 71.6
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 2.3e-54 216.1 191 63.9
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.1e-53 213.8 178 65.2
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.1e-53 213.8 198 62.6
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 1.5e-53 213.4 192 64.6
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 1.5e-53 213.4 192 62.5
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 1.9e-53 213.0 186 65.6
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 2.5e-53 212.6 195 65.6
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 3.3e-53 212.2 188 64.4
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 4.3e-53 211.8 194 63.4
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 9.6e-53 210.7 191 62.8
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 2.1e-52 209.5 193 64.8
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 2.1e-52 209.5 191 63.9
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 2.8e-52 209.1 191 64.9
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 3.7e-52 208.8 186 62.4
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.7e-52 208.8 189 65.1
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 6.3e-52 208.0 189 64.0
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 1.1e-51 207.2 189 64.6
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 3.1e-51 205.7 198 61.1
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 4.1e-51 205.3 185 62.2
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 6.9e-51 204.5 192 59.4
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 2.6e-50 202.6 189 62.4
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 5.9e-50 201.4 188 62.2
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 1.0e-49 200.7 191 61.8
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 2.9e-49 199.1 177 65.5
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 2.9e-49 199.1 175 66.9
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 3.8e-49 198.7 191 61.3
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 5.0e-49 198.4 192 59.4
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 6.5e-49 198.0 186 59.7
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 6.5e-49 198.0 192 61.5
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 6.5e-49 198.0 191 60.7
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 1.9e-48 196.4 193 59.6
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 4.2e-48 195.3 186 61.8
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 3.6e-47 192.2 186 60.8
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 6.1e-47 191.4 192 58.9
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 1.8e-46 189.9 183 59.6
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 2.3e-46 189.5 183 60.1
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 3.9e-46 188.7 189 59.8
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 8.7e-46 187.6 186 59.1
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 8.7e-46 187.6 186 59.1
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 7.4e-45 184.5 199 53.3
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 9.7e-45 184.1 189 58.7
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 2.8e-44 182.6 147 70.1
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 1.4e-43 180.3 148 68.9
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 1.4e-43 180.3 187 56.7
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 3.1e-43 179.1 176 60.8
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 6.9e-43 177.9 189 59.3
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 3.4e-42 175.6 213 56.3
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 1.3e-41 173.7 217 52.1
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 3.8e-41 172.2 187 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 1.9e-40 169.9 187 53.5
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 4.6e-39 165.2 205 50.2
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 6.1e-39 164.9 185 51.4
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 6.1e-39 164.9 185 51.4
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.0e-38 164.1 143 67.8
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.5e-37 160.2 187 48.1
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.6e-37 159.5 186 52.2
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 6.3e-36 154.8 136 64.0
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 3.4e-34 149.1 147 60.5
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 4.5e-34 148.7 187 47.6
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 2.5e-32 142.9 109 71.6
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 4.2e-32 142.1 165 52.1
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 2.1e-31 139.8 142 57.0
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 2.7e-31 139.4 143 56.6
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 5.2e-30 135.2 189 46.0
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 9.7e-29 131.0 200 46.0
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 5.3e-27 125.2 154 52.6
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 5.3e-27 125.2 129 58.9
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 6.5e-25 118.2 81 79.0
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 3.6e-23 112.5 88 69.3
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 3.0e-22 109.4 83 68.7
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 4.0e-22 109.0 83 69.9
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 6.7e-22 108.2 83 67.5
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.1e-19 100.9 84 64.3
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 1.6e-18 97.1 89 60.7
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 4.5e-18 95.5 59 79.7
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 1.3e-17 94.0 78 66.7
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 6.5e-17 91.7 129 46.5
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 2.5e-16 89.7 123 52.0
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 7.2e-16 88.2 74 59.5
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 1.4e-14 84.0 89 56.2
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 4.0e-14 82.4 84 54.8
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 4.0e-14 82.4 67 70.1
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 2.8e-12 76.3 99 47.5
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 7.7e-10 68.2 176 32.4
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 1.5e-08 63.9 49 63.3
CiPaw.15G164900 Carya illinoinensis HOM05D005762 ORTHO05D006823 6.8e-06 55.1 87 47.1


User provided reference genes

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