Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G100300 Manihot esculenta HOM05D000434 ORTHO05D250837 5.5e-285 984.2 736 100.0
Manes.06G070200 Manihot esculenta HOM05D000434 ORTHO05D005487 2.6e-125 453.8 738 63.3
Sabra10G0096400 Salix brachista HOM05D000434 ORTHO05D005487 4.4e-80 303.5 761 48.4
Potri.010G126900 Populus trichocarpa HOM05D000434 ORTHO05D005487 3.2e-67 260.8 747 48.2
Potri.008G119100 Populus trichocarpa HOM05D000434 ORTHO05D005487 1.2e-64 252.3 698 45.0
Ciclev10030630m.g Citrus clementina HOM05D000434 ORTHO05D005487 6.5e-60 236.5 754 42.0
Thecc.02G357400 Theobroma cacao HOM05D000434 ORTHO05D005487 1.6e-58 231.9 749 53.0
Sabra08G0090400 Salix brachista HOM05D000434 ORTHO05D005487 6.8e-57 226.5 777 42.2
Gorai.013G081700 Gossypium raimondii HOM05D000434 ORTHO05D005487 1.2e-53 215.7 760 48.6
Gohir.D13G071400 Gossypium hirsutum HOM05D000434 ORTHO05D005487 1.5e-51 208.8 770 47.8
Gohir.A13G053900 Gossypium hirsutum HOM05D000434 ORTHO05D005487 9.5e-51 206.1 752 47.9
TAR374G1521 Trochodendron aralioides HOM05D000434 ORTHO05D005487 2.8e-50 204.5 194 58.8
Cfa018611 Carpinus fangiana HOM05D000434 ORTHO05D005487 1.8e-49 201.8 824 39.0
CiPaw.16G004900 Carya illinoinensis HOM05D000434 ORTHO05D005487 8.8e-49 199.5 197 54.8
Duzib248G1356 Durio zibethinus HOM05D000434 ORTHO05D005487 2.6e-48 198.0 766 41.3
Dinv04482 Davidia involucrata HOM05D000434 ORTHO05D005487 2.2e-47 194.9 754 37.1
GSVIVG01011916001 Vitis vinifera HOM05D000434 ORTHO05D005487 2.8e-47 194.5 734 41.3
QL93p0130_0046 Quercus lobata HOM05D000434 ORTHO05D005487 4.9e-47 193.7 729 45.0
COL.COLO4_07904 Corchorus olitorius HOM05D000434 ORTHO05D005487 1.4e-46 192.2 796 30.4
Haze_17463 Corylus avellana HOM05D000434 ORTHO05D005487 1.4e-46 192.2 756 40.7
QL01p043953 Quercus lobata HOM05D000434 ORTHO05D005487 4.1e-46 190.7 728 46.4
CiPaw.15G005700 Carya illinoinensis HOM05D000434 ORTHO05D005487 1.2e-45 189.1 197 54.8
Cc11_g10310 Coffea canephora HOM05D000434 ORTHO05D005487 5.0e-44 183.7 189 54.0
Atru.chr11.1294 Acer truncatum HOM05D000434 ORTHO05D005487 1.9e-43 181.8 195 53.3
MBI19_g33767_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005487 1.2e-42 179.1 194 51.0
Oeu033298.1 Olea europaea HOM05D000434 ORTHO05D005487 1.6e-42 178.7 178 53.4
Dinv21107 Davidia involucrata HOM05D000434 ORTHO05D005487 2.8e-42 177.9 204 51.5
Cpa.g.c32989 Carica papaya HOM05D000434 ORTHO05D005487 3.6e-42 177.6 193 52.8
Hma1.2p1_0030F.1_g018190 Hydrangea macrophylla HOM05D000434 ORTHO05D005487 1.4e-41 175.6 183 55.2
CSS0003031 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005487 5.2e-41 173.7 191 51.8
Nn4g23805 Nelumbo nucifera HOM05D000434 ORTHO05D005487 5.2e-41 173.7 204 48.5
Peaxi162Scf00382g00219 Petunia axillaris HOM05D000434 ORTHO05D005487 5.7e-40 170.2 196 52.0
Sc04g0006550 Simmondsia chinensis HOM05D000434 ORTHO05D005487 2.9e-39 167.9 195 49.2
Migut.L01078 Erythranthe guttata HOM05D000434 ORTHO05D005487 7.0e-38 163.3 179 49.7
SGA_v2.0_scaffold124G33549 Striga asiatica HOM05D000434 ORTHO05D005487 9.2e-38 162.9 175 50.3
Glyma.01G082700 Glycine max HOM05D000434 ORTHO05D005487 1.2e-37 162.5 198 47.5
Hund25082 Selenicereus undatus HOM05D000434 ORTHO05D005487 1.2e-37 162.5 194 45.9
Nn3g17801 Nelumbo nucifera HOM05D000434 ORTHO05D005487 2.7e-37 161.4 184 52.7
Prupe.1G308700 Prunus persica HOM05D000434 ORTHO05D005487 2.7e-37 161.4 633 42.7
TPR.G26286 Trifolium pratense HOM05D000434 ORTHO05D005487 7.8e-37 159.8 192 52.6
CAN.G656.26 Capsicum annuum HOM05D000434 ORTHO05D005487 1.0e-36 159.5 195 46.7
Oeu057624.1 Olea europaea HOM05D000434 ORTHO05D005487 3.0e-36 157.9 213 44.1
Sed0025596 Sechium edule HOM05D000434 ORTHO05D005487 5.0e-36 157.1 192 47.9
Aqoxy3G00326 Aquilegia oxysepala HOM05D000434 ORTHO05D005487 8.6e-36 156.4 204 46.1
CSS0003626 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005487 8.6e-36 156.4 777 35.8
DCAR_007234 Daucus carota HOM05D000434 ORTHO05D005487 1.5e-35 155.6 191 50.8
Solyc05g009540.3 Solanum lycopersicum HOM05D000434 ORTHO05D005487 1.5e-35 155.6 197 48.2
Sopen05g005350 Solanum pennellii HOM05D000434 ORTHO05D005487 1.5e-35 155.6 196 46.4
vmacro10548 Vaccinium macrocarpon HOM05D000434 ORTHO05D005487 4.3e-35 154.1 789 35.1
Medtr1g111180 Medicago truncatula HOM05D000434 ORTHO05D005487 5.6e-35 153.7 192 49.5
SEGI_05979 Sequoiadendron giganteum HOM05D000434 ORTHO05D005487 7.3e-35 153.3 187 48.7
ATR0665G319 Amborella trichopoda HOM05D000434 ORTHO05D005487 9.5e-35 152.9 185 49.7
Ca_11184_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005487 1.2e-34 152.5 192 50.0
VMungo0720G1375 Vigna mungo HOM05D000434 ORTHO05D005487 2.8e-34 151.4 196 48.0
Actinidia16640 Actinidia chinensis HOM05D000434 ORTHO05D005487 1.4e-33 149.1 153 52.9
AT3G25840 Arabidopsis thaliana HOM05D000434 ORTHO05D005487 1.4e-33 149.1 203 46.3
Sed0007294 Sechium edule HOM05D000434 ORTHO05D005487 2.3e-33 148.3 195 48.7
Phvul.007G026100 Phaseolus vulgaris HOM05D000434 ORTHO05D005487 4.0e-33 147.5 193 46.1
arahy.Tifrunner.gnm1.ann1.11CPHY Arachis hypogaea HOM05D000434 ORTHO05D005487 8.9e-33 146.4 769 40.1
AL5G14460 Arabidopsis lyrata HOM05D000434 ORTHO05D005487 1.2e-32 146.0 203 46.3
Rhsim09G0109700 Rhododendron simsii HOM05D000434 ORTHO05D005487 2.6e-32 144.8 777 34.2
vmacro01373 Vaccinium macrocarpon HOM05D000434 ORTHO05D005487 2.6e-32 144.8 795 36.4
PSO478G4149 Papaver somniferum HOM05D000434 ORTHO05D005487 7.5e-32 143.3 197 48.2
Lalb_Chr21g0309021 Lupinus albus HOM05D000434 ORTHO05D005487 1.3e-31 142.5 198 46.5
HPP92_009435 Vanilla planifolia HOM05D000434 ORTHO05D005487 1.3e-31 142.5 211 43.1
Migut.E00325 Erythranthe guttata HOM05D000434 ORTHO05D005487 2.2e-31 141.7 203 45.3
CDE05G2965 Ceratophyllum demersum HOM05D000434 ORTHO05D005487 4.9e-31 140.6 188 45.2
AUR62002892 Chenopodium quinoa HOM05D000434 ORTHO05D005487 4.9e-31 140.6 170 48.8
AUR62035250 Chenopodium quinoa HOM05D000434 ORTHO05D005487 1.1e-30 139.4 178 46.6
Nitab4.5_0004895g0050 Nicotiana tabacum HOM05D000434 ORTHO05D005487 7.0e-30 136.7 773 38.8
PSO017G6446 Papaver somniferum HOM05D000434 ORTHO05D005487 7.0e-30 136.7 235 42.1
Phvul.003G043900 Phaseolus vulgaris HOM05D000434 ORTHO05D005487 1.6e-29 135.6 185 45.4
EL10Ac6g14439 Beta vulgaris HOM05D000434 ORTHO05D005487 2.7e-29 134.8 178 46.1
ECA233G3886 Erigeron canadensis HOM05D000434 ORTHO05D005487 6.0e-29 133.7 199 43.7
MD16G1044600 Malus domestica HOM05D000434 ORTHO05D005487 1.0e-28 132.9 207 44.0
Psat6g229160 Pisum sativum HOM05D000434 ORTHO05D005487 1.0e-28 132.9 821 32.2
CsaV3_5G034190 Cucumis sativus L. HOM05D000434 ORTHO05D005487 1.3e-28 132.5 202 43.1
CDE11G0725 Ceratophyllum demersum HOM05D000434 ORTHO05D005487 3.0e-28 131.3 179 43.6
THA.LOC104825736 Tarenaya hassleriana HOM05D000434 ORTHO05D005487 3.0e-28 131.3 224 42.9
ECA233G4697 Erigeron canadensis HOM05D000434 ORTHO05D005487 3.9e-28 131.0 206 42.7
Nitab4.5_0003823g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005487 3.9e-28 131.0 747 37.6
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 6.6e-28 130.2 199 42.2
ClCG05G022840 Citrullus lanatus HOM05D000434 ORTHO05D005487 6.6e-28 130.2 187 43.3
Lalb_Chr17g0342041 Lupinus albus HOM05D000434 ORTHO05D005487 8.6e-28 129.8 199 42.2
Lalb_Chr02g0146071 Lupinus albus HOM05D000434 ORTHO05D005487 2.5e-27 128.3 767 36.1
Aa31LG1G1500 Aethionema arabicum HOM05D000434 ORTHO05D005487 5.6e-27 127.1 211 41.7
HanXRQChr08g0214201 Helianthus annuus HOM05D000434 ORTHO05D005487 9.5e-27 126.3 220 37.7
Lj5g0000210 Lotus japonicus HOM05D000434 ORTHO05D005487 9.5e-27 126.3 752 36.3
MELO3C012233.2 Cucumis melo HOM05D000434 ORTHO05D005487 1.2e-26 125.9 155 48.4
Sp2g15070 Schrenkiella parvula HOM05D000434 ORTHO05D005487 1.2e-26 125.9 204 40.7
Thhalv10003622m.g Eutrema salsugineum HOM05D000434 ORTHO05D005487 2.1e-26 125.2 184 43.5
MSTRG.825 Avicennia marina HOM05D000434 ORTHO05D005487 2.8e-26 124.8 199 38.7
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 1.8e-25 122.1 184 42.4
Glyma.10G275400 Glycine max HOM05D000434 ORTHO05D005487 1.8e-25 122.1 93 63.4
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 2.3e-25 121.7 195 41.0
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 4.0e-25 120.9 184 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1606 Anthoceros agrestis HOM05D000434 ORTHO05D005487 5.2e-25 120.6 196 43.4
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 5.2e-25 120.6 184 41.8
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 5.2e-25 120.6 184 41.8
unitig_699.g19888 Utricularia gibba HOM05D000434 ORTHO05D005487 6.8e-25 120.2 187 43.9
FvH4_4g27640 Fragaria vesca HOM05D000434 ORTHO05D005487 1.2e-24 119.4 189 43.4
FAN07G0245 Fragaria x ananassa HOM05D000434 ORTHO05D005487 1.2e-24 119.4 189 43.4
Aa31LG2G6510 Aethionema arabicum HOM05D000434 ORTHO05D005487 1.5e-24 119.0 196 43.9
Rhsim12G0082600 Rhododendron simsii HOM05D000434 ORTHO05D005487 1.5e-24 119.0 163 46.6
FAN22G2294 Fragaria x ananassa HOM05D000434 ORTHO05D005487 2.0e-24 118.6 189 42.3
Carub.0005s0367 Capsella rubella HOM05D000434 ORTHO05D005487 3.4e-24 117.9 164 43.9
BcaB07g30630 Brassica carinata HOM05D000434 ORTHO05D005487 5.8e-24 117.1 204 40.7
FAN12G0546 Fragaria x ananassa HOM05D000434 ORTHO05D005487 7.5e-24 116.7 189 42.9
Zm00001eb033230 Zea mays HOM05D000434 ORTHO05D005487 7.5e-24 116.7 155 45.2
Glyma.20G114300 Glycine max HOM05D000434 ORTHO05D005487 1.3e-23 115.9 196 43.9
MD13G1043800 Malus domestica HOM05D000434 ORTHO05D005487 7.1e-22 110.2 734 35.4
Lsat_1_v5_gn_8_39220 Lactuca sativa HOM05D000434 ORTHO05D005487 2.1e-21 108.6 212 39.6
PGSC0003DMG400012975 Solanum tuberosum HOM05D000434 ORTHO05D005487 6.0e-21 107.1 815 34.1
Zm00001eb133880 Zea mays HOM05D000434 ORTHO05D005487 6.0e-21 107.1 152 42.1
PGSC0003DMG400020660 Solanum tuberosum HOM05D000434 ORTHO05D005487 7.8e-21 106.7 271 31.4
Eucgr.B03029 Eucalyptus grandis HOM05D000434 ORTHO05D005487 1.3e-20 105.9 214 33.2
Mapoly0105s0003 Marchantia polymorpha HOM05D000434 ORTHO05D005487 1.7e-20 105.5 169 42.6
AT1G13350 Arabidopsis thaliana HOM05D000434 ORTHO05D005487 3.9e-20 104.4 190 36.3
A06p42450 Brassica napus HOM05D000434 ORTHO05D005487 4.3e-19 100.9 169 39.1
BraA06t27160Z Brassica rapa HOM05D000434 ORTHO05D005487 4.3e-19 100.9 169 39.1
BcaC06g31112 Brassica carinata HOM05D000434 ORTHO05D005487 7.3e-19 100.1 169 38.5
BcaC06g33949 Brassica carinata HOM05D000434 ORTHO05D005487 2.1e-18 98.6 197 35.5
C07p34860 Brassica napus HOM05D000434 ORTHO05D005487 2.1e-18 98.6 197 35.5
RcHm_v2.0_Chr4g0435481 Rosa chinensis HOM05D000434 ORTHO05D005487 2.1e-18 98.6 711 34.2
HanXRQChr16g0506981 Helianthus annuus HOM05D001644 ORTHO05D005487 2.8e-18 98.2 100 51.0
BolC7t44018H Brassica oleracea HOM05D000434 ORTHO05D005487 3.6e-18 97.8 185 37.3
Sopen06g002630 Solanum pennellii HOM05D000434 ORTHO05D005487 3.1e-17 94.7 267 29.6
SMO367G0988 Selaginella moellendorffii HOM05D000434 ORTHO05D005487 5.2e-17 94.0 190 40.0
Pp3c9_3840 Physcomitrium patens HOM05D000434 ORTHO05D005487 9.9e-16 89.7 75 57.3
CARHR013730 Cardamine hirsuta HOM05D000434 ORTHO05D005487 1.6e-13 82.4 170 36.5
FAN12G0730 Fragaria x ananassa HOM05D000434 ORTHO05D005487 2.7e-13 81.6 156 40.4
AL5G34610 Arabidopsis lyrata HOM05D000434 ORTHO05D005487 3.0e-12 78.2 176 37.5
DCAR_026727 Daucus carota HOM05D000434 ORTHO05D005487 1.1e-11 76.3 761 26.8
Carub.0005s2022 Capsella rubella HOM05D000434 ORTHO05D005487 2.5e-11 75.1 178 38.2
Lsat_1_v5_gn_9_72680 Lactuca sativa HOM05D000434 ORTHO05D005487 9.6e-11 73.2 43 69.8
PSO478G5095 Papaver somniferum HOM05D000434 ORTHO05D005487 2.8e-10 71.6 159 38.4
PSO528G0071 Papaver somniferum HOM05D000434 ORTHO05D005487 3.6e-10 71.2 181 34.8
Pp3c15_9260 Physcomitrium patens HOM05D000434 ORTHO05D005487 3.6e-10 71.2 141 36.2
Cpa.g.sc1.186 Carica papaya HOM05D000434 ORTHO05D005487 3.4e-08 64.7 281 30.2
AT3G53640 Arabidopsis thaliana HOM05D000434 ORTHO05D005487 5.8e-08 63.9 202 31.7


User provided reference genes

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