Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G084950 Manihot esculenta HOM05D000422 ORTHO05D013120 6.3e-55 217.2 113 100.0
Manes.06G085600 Manihot esculenta HOM05D000422 ORTHO05D003570 1.1e-30 136.7 81 85.2
Nn4g24657 Nelumbo nucifera HOM05D000422 ORTHO05D003570 3.8e-28 128.3 87 74.7
Phvul.009G192401 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 3.8e-28 128.3 83 75.9
CiPaw.11G051900 Carya illinoinensis HOM05D000422 ORTHO05D003570 6.6e-28 127.5 81 77.8
Gohir.D07G073400 Gossypium hirsutum HOM05D000422 ORTHO05D003570 6.6e-28 127.5 82 80.5
Gorai.001G077600 Gossypium raimondii HOM05D000422 ORTHO05D003570 6.6e-28 127.5 82 80.5
Gohir.A07G069000 Gossypium hirsutum HOM05D000422 ORTHO05D003570 8.6e-28 127.1 82 79.3
Potri.015G056900 Populus trichocarpa HOM05D000422 ORTHO05D003570 8.6e-28 127.1 81 77.8
Potri.015G057000 Populus trichocarpa HOM05D000422 ORTHO05D003570 8.6e-28 127.1 81 77.8
RcHm_v2.0_Chr7g0182901 Rosa chinensis HOM05D000422 ORTHO05D003570 1.5e-27 126.3 83 78.3
Lj4g0026924 Lotus japonicus HOM05D000422 ORTHO05D003570 1.9e-27 125.9 81 76.5
Solyc03g115230.3 Solanum lycopersicum HOM05D000422 ORTHO05D003570 1.9e-27 125.9 81 77.8
Sopen03g034270 Solanum pennellii HOM05D000422 ORTHO05D003570 1.9e-27 125.9 81 77.8
TWI60G1501 Tripterygium wilfordii HOM05D000422 ORTHO05D003570 1.9e-27 125.9 82 76.8
Duzib084G0855 Durio zibethinus HOM05D000422 ORTHO05D003570 3.3e-27 125.2 81 75.3
Duzib205G1888 Durio zibethinus HOM05D000422 ORTHO05D003570 3.3e-27 125.2 81 76.5
CSS0011182 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 4.3e-27 124.8 81 76.5
CSS0042047 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 4.3e-27 124.8 81 76.5
PGR044G0818 Punica granatum HOM05D000422 ORTHO05D003570 5.6e-27 124.4 81 72.8
Eucgr.K02521 Eucalyptus grandis HOM05D000422 ORTHO05D003570 7.3e-27 124.0 81 75.3
DCAR_010146 Daucus carota HOM05D000422 ORTHO05D003570 9.5e-27 123.6 81 76.5
TWI81G0052 Tripterygium wilfordii HOM05D000422 ORTHO05D003570 9.5e-27 123.6 81 75.3
Thecc.03G100100 Theobroma cacao HOM05D000422 ORTHO05D003570 1.2e-26 123.2 82 78.0
CAN.G479.16 Capsicum annuum HOM05D000422 ORTHO05D003570 2.8e-26 122.1 81 75.3
GSVIVG01007880001 Vitis vinifera HOM05D000422 ORTHO05D003570 2.8e-26 122.1 81 75.3
Phvul.004G044100 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 3.6e-26 121.7 83 72.3
Phvul.004G044132 Phaseolus vulgaris HOM05D000422 ORTHO05D003570 3.6e-26 121.7 83 72.3
QL10p019244 Quercus lobata HOM05D000422 ORTHO05D003570 3.6e-26 121.7 81 75.3
VMungo1309G2280 Vigna mungo HOM05D000422 ORTHO05D003570 3.6e-26 121.7 83 73.5
Medtr4g109450 Medicago truncatula HOM05D000422 ORTHO05D003570 4.7e-26 121.3 81 71.6
Psat4g047480 Pisum sativum HOM05D000422 ORTHO05D003570 4.7e-26 121.3 81 71.6
Psat4g050520 Pisum sativum HOM05D000422 ORTHO05D003570 4.7e-26 121.3 81 71.6
Ca_21783_v3 Cicer arietinum L. HOM05D000422 ORTHO05D003570 6.1e-26 120.9 81 71.6
Glyma.05G022200 Glycine max HOM05D000422 ORTHO05D003570 6.1e-26 120.9 83 73.5
PGSC0003DMG400024644 Solanum tuberosum HOM05D000422 ORTHO05D003570 6.1e-26 120.9 81 74.1
Ciclev10018766m.g Citrus clementina HOM05D000422 ORTHO05D003570 8.0e-26 120.6 81 72.8
Haze_07704 Corylus avellana HOM05D000422 ORTHO05D003570 1.8e-25 119.4 83 72.3
Gohir.D03G096200 Gossypium hirsutum HOM05D000422 ORTHO05D003570 1.8e-25 119.4 82 79.3
Gorai.003G100900 Gossypium raimondii HOM05D000422 ORTHO05D003570 1.8e-25 119.4 82 79.3
Nitab4.5_0001688g0070 Nicotiana tabacum HOM05D000422 ORTHO05D003570 1.8e-25 119.4 81 71.6
CANSAT56G0137 Cannabis sativa HOM05D000422 ORTHO05D003570 3.0e-25 118.6 82 73.2
Dinv22790 Davidia involucrata HOM05D000422 ORTHO05D003570 3.0e-25 118.6 81 72.8
Lalb_Chr13g0302911 Lupinus albus HOM05D000422 ORTHO05D003570 3.0e-25 118.6 82 74.4
Peaxi162Scf00201g00240 Petunia axillaris HOM05D000422 ORTHO05D003570 3.0e-25 118.6 81 71.6
Cfa019315 Carpinus fangiana HOM05D000422 ORTHO05D003570 4.0e-25 118.2 81 72.8
MELO3C002020.2 Cucumis melo HOM05D000422 ORTHO05D003570 4.0e-25 118.2 81 71.6
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 4.0e-25 118.2 81 71.6
Prupe.5G203700 Prunus persica HOM05D000422 ORTHO05D003570 4.0e-25 118.2 81 71.6
Sabra15G0081900 Salix brachista HOM05D000422 ORTHO05D003570 4.0e-25 118.2 81 74.1
Sabra15G0082300 Salix brachista HOM05D000422 ORTHO05D003570 4.0e-25 118.2 81 74.1
MD14G1210600 Malus domestica HOM05D000422 ORTHO05D003570 5.2e-25 117.9 83 73.5
Nitab4.5_0019776g0010 Nicotiana tabacum HOM05D000422 ORTHO05D003570 5.2e-25 117.9 81 71.6
TPR.G2025 Trifolium pratense HOM05D000422 ORTHO05D003570 6.8e-25 117.5 81 69.1
Cc04_g13250 Coffea canephora HOM05D000422 ORTHO05D003570 8.9e-25 117.1 82 74.4
FvH4_5g14020 Fragaria vesca HOM05D000422 ORTHO05D003570 8.9e-25 117.1 83 73.5
FAN13G3227 Fragaria x ananassa HOM05D000422 ORTHO05D003570 8.9e-25 117.1 83 73.5
FAN18G4292 Fragaria x ananassa HOM05D000422 ORTHO05D003570 8.9e-25 117.1 83 73.5
MBI07_g34676_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D003570 8.9e-25 117.1 82 72.0
arahy.Tifrunner.gnm1.ann1.TFY1SD Arachis hypogaea HOM05D000422 ORTHO05D003570 1.2e-24 116.7 82 72.0
FAN08G0773 Fragaria x ananassa HOM05D000422 ORTHO05D003570 1.2e-24 116.7 83 73.5
Nitab4.5_0001485g0200 Nicotiana tabacum HOM05D000422 ORTHO05D003570 1.2e-24 116.7 81 70.4
Peaxi162Scf00201g00232 Petunia axillaris HOM05D000422 ORTHO05D003570 1.2e-24 116.7 81 71.6
ClCG04G011880 Citrullus lanatus HOM05D000422 ORTHO05D003570 2.0e-24 115.9 81 70.4
Aqoxy6G00459 Aquilegia oxysepala HOM05D000422 ORTHO05D003570 2.6e-24 115.5 96 65.6
Nitab4.5_0003906g0010 Nicotiana tabacum HOM05D000422 ORTHO05D003570 2.6e-24 115.5 81 70.4
Rhsim08G0147100 Rhododendron simsii HOM05D000422 ORTHO05D003570 4.4e-24 114.8 82 72.0
arahy.Tifrunner.gnm1.ann1.38YHDK Arachis hypogaea HOM05D000422 ORTHO05D003570 7.5e-24 114.0 82 69.5
A07p29460 Brassica napus HOM05D000422 ORTHO05D003570 7.5e-24 114.0 82 70.7
BraA07t30585Z Brassica rapa HOM05D000422 ORTHO05D003570 7.5e-24 114.0 82 70.7
Oeu008247.1 Olea europaea HOM05D000422 ORTHO05D003570 7.5e-24 114.0 81 70.4
C06p33420 Brassica napus HOM05D000422 ORTHO05D003570 1.7e-23 112.8 82 70.7
BolC6t38457H Brassica oleracea HOM05D000422 ORTHO05D003570 1.7e-23 112.8 82 70.7
Thhalv10018095m.g Eutrema salsugineum HOM05D000422 ORTHO05D003570 1.7e-23 112.8 82 70.7
SalBow7G2929 Salvia bowleyana HOM05D000422 ORTHO05D003570 1.7e-23 112.8 81 70.4
Sp5g29470 Schrenkiella parvula HOM05D000422 ORTHO05D003570 1.7e-23 112.8 82 70.7
SGA_v2.0_scaffold7G04036 Striga asiatica HOM05D000422 ORTHO05D003570 2.2e-23 112.5 82 68.3
BcaB02g06935 Brassica carinata HOM05D000422 ORTHO05D003570 3.7e-23 111.7 82 70.7
MD06G1201600 Malus domestica HOM05D000422 ORTHO05D003570 3.7e-23 111.7 83 67.5
RcHm_v2.0_Chr1g0366791 Rosa chinensis HOM05D000422 ORTHO05D003570 3.7e-23 111.7 77 68.8
BcaC08g45595 Brassica carinata HOM05D000422 ORTHO05D013120 4.9e-23 111.3 82 69.5
BcaC08g46861 Brassica carinata HOM05D000422 ORTHO05D003570 4.9e-23 111.3 82 69.5
A07p40110 Brassica napus HOM05D000422 ORTHO05D003570 4.9e-23 111.3 82 69.5
C06p48480 Brassica napus HOM05D000422 ORTHO05D003570 4.9e-23 111.3 82 69.5
BolC6t39876H Brassica oleracea HOM05D000422 ORTHO05D003570 4.9e-23 111.3 82 69.5
BraA07t31556Z Brassica rapa HOM05D000422 ORTHO05D003570 4.9e-23 111.3 82 69.5
Atru.chr12.1285 Acer truncatum HOM05D000422 ORTHO05D003570 8.3e-23 110.5 82 69.5
Migut.D01695 Erythranthe guttata HOM05D000422 ORTHO05D003570 1.1e-22 110.2 82 69.5
THA.LOC104812099 Tarenaya hassleriana HOM05D000422 ORTHO05D003570 1.1e-22 110.2 82 69.5
vmacro17599 Vaccinium macrocarpon HOM05D000422 ORTHO05D003570 1.4e-22 109.8 82 70.7
Aa31LG4G4560 Aethionema arabicum HOM05D000422 ORTHO05D003570 1.8e-22 109.4 82 68.3
AUR62008514 Chenopodium quinoa HOM05D000422 ORTHO05D003570 1.8e-22 109.4 81 69.1
Dinv15013 Davidia involucrata HOM05D000422 ORTHO05D013120 1.8e-22 109.4 79 70.9
HanXRQChr16g0502371 Helianthus annuus HOM05D000422 ORTHO05D003570 1.8e-22 109.4 84 65.5
Lj5A104T40 Lonicera japonica HOM05D000422 ORTHO05D003570 1.8e-22 109.4 82 68.3
MSTRG.4455 Avicennia marina HOM05D000422 ORTHO05D003570 2.4e-22 109.0 81 66.7
Haze_12929 Corylus avellana HOM05D000422 ORTHO05D013120 2.4e-22 109.0 83 66.3
Oeu001008.1 Olea europaea HOM05D000422 ORTHO05D003570 3.2e-22 108.6 76 69.7
Oeu001009.1 Olea europaea HOM05D000422 ORTHO05D003570 3.2e-22 108.6 76 69.7
Actinidia25778 Actinidia chinensis HOM05D000422 ORTHO05D003570 5.4e-22 107.8 81 65.4
CDE02G1700 Ceratophyllum demersum HOM05D000422 ORTHO05D003570 5.4e-22 107.8 83 67.5
AUR62021576 Chenopodium quinoa HOM05D000422 ORTHO05D003570 5.4e-22 107.8 81 67.9
Hund02594 Selenicereus undatus HOM05D000422 ORTHO05D003570 5.4e-22 107.8 81 67.9
Os05g0519700 Oryza sativa ssp. japonica HOM05D000422 ORTHO05D003570 9.2e-22 107.1 83 63.9
Hund30633 Selenicereus undatus HOM05D000422 ORTHO05D013120 9.2e-22 107.1 81 67.9
Hund30634 Selenicereus undatus HOM05D000422 ORTHO05D013120 9.2e-22 107.1 81 67.9
HanXRQChr09g0270211 Helianthus annuus HOM05D000422 ORTHO05D003570 1.6e-21 106.3 84 64.3
ECA232G3644 Erigeron canadensis HOM05D000422 ORTHO05D003570 2.0e-21 105.9 84 64.3
Sed0000797 Sechium edule HOM05D000422 ORTHO05D003570 2.0e-21 105.9 81 65.4
ATR1153G094 Amborella trichopoda HOM05D000422 ORTHO05D003570 2.7e-21 105.5 88 64.8
SGA_v2.0_scaffold114G31923 Striga asiatica HOM05D000422 ORTHO05D003570 3.5e-21 105.1 82 64.6
Ah.11g047920 Amaranthus hybridus HOM05D000422 ORTHO05D003570 4.6e-21 104.8 81 67.9
Dinv22788 Davidia involucrata HOM05D000422 ORTHO05D013120 5.9e-21 104.4 82 69.5
HPP92_022976 Vanilla planifolia HOM05D000422 ORTHO05D003570 5.9e-21 104.4 81 63.0
Hma1.2p1_0322F.1_g124740 Hydrangea macrophylla HOM05D000422 ORTHO05D003570 1.0e-20 103.6 82 64.6
AL2G34170 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 2.3e-20 102.4 82 67.1
CDE08G0638 Ceratophyllum demersum HOM05D000422 ORTHO05D003570 2.3e-20 102.4 84 65.5
Lsat_1_v5_gn_4_116120 Lactuca sativa HOM05D000422 ORTHO05D003570 5.0e-20 101.3 86 60.5
Sc12g0006610 Simmondsia chinensis HOM05D000422 ORTHO05D003570 5.0e-20 101.3 82 67.1
Lsat_1_v5_gn_4_110600 Lactuca sativa HOM05D000422 ORTHO05D003570 6.6e-20 100.9 86 59.3
Carub.0002s2109 Capsella rubella HOM05D000422 ORTHO05D003570 8.6e-20 100.5 82 65.9
CARHR067570 Cardamine hirsuta HOM05D000422 ORTHO05D003570 8.6e-20 100.5 82 65.9
Peaxi162Scf00013g00629 Petunia axillaris HOM05D000422 ORTHO05D003570 8.6e-20 100.5 79 59.5
COL.COLO4_36898 Corchorus olitorius HOM05D000422 ORTHO05D003570 1.1e-19 100.1 61 80.3
COL.COLO4_38108 Corchorus olitorius HOM05D000422 ORTHO05D003570 1.1e-19 100.1 61 80.3
PSO566G0203 Papaver somniferum HOM05D000422 ORTHO05D003570 1.5e-19 99.8 82 63.4
Lalb_Chr12g0197141 Lupinus albus HOM05D000422 ORTHO05D003570 1.9e-19 99.4 82 62.2
unitig_37.g12723 Utricularia gibba HOM05D000422 ORTHO05D003570 2.5e-19 99.0 81 61.7
EL10Ac5g11116 Beta vulgaris HOM05D000422 ORTHO05D003570 3.3e-19 98.6 70 70.0
SEGI_29151 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 5.6e-19 97.8 82 61.0
HanXRQChr16g0502311 Helianthus annuus HOM05D000422 ORTHO05D003570 9.5e-19 97.1 79 60.8
RcHm_v2.0_Chr7g0182871 Rosa chinensis HOM05D000422 ORTHO05D003570 9.5e-19 97.1 64 75.0
Medtr2g006950 Medicago truncatula HOM05D000422 ORTHO05D003570 1.6e-18 96.3 81 59.3
AT1G74310 Arabidopsis thaliana HOM05D000422 ORTHO05D003570 2.1e-18 95.9 82 65.9
Gohir.A03G069700 Gossypium hirsutum HOM05D000422 ORTHO05D003570 6.2e-18 94.4 82 68.3
Pp3c19_4790 Physcomitrium patens HOM05D000422 ORTHO05D003570 6.2e-18 94.4 73 58.9
Mapoly0033s0015 Marchantia polymorpha HOM05D000422 ORTHO05D003570 3.1e-17 92.0 82 58.5
MD14G1211000 Malus domestica HOM05D000422 ORTHO05D003570 5.2e-17 91.3 63 69.8
SEGI_00080 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 5.2e-17 91.3 82 58.5
Ciclev10024136m.g Citrus clementina HOM05D000422 ORTHO05D003570 6.8e-17 90.9 81 60.5
Medtr7g028970 Medicago truncatula HOM05D000422 ORTHO05D003570 6.8e-17 90.9 71 64.8
PSO782G0623 Papaver somniferum HOM05D000422 ORTHO05D003570 6.8e-17 90.9 82 58.5
Medtr7g096480 Medicago truncatula HOM05D000422 ORTHO05D003570 1.2e-16 90.1 68 61.8
ClCG06G015710 Citrullus lanatus HOM05D000422 ORTHO05D003570 3.4e-16 88.6 72 59.7
MELO3C017218.2 Cucumis melo HOM05D000422 ORTHO05D003570 7.5e-16 87.4 77 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4233 Anthoceros agrestis HOM05D000422 ORTHO05D003570 3.7e-15 85.1 81 55.6
SMO117G0193 Selaginella moellendorffii HOM05D000422 ORTHO05D003570 3.7e-15 85.1 81 58.0
RhsimUnG0229400 Rhododendron simsii HOM05D000422 ORTHO05D013120 6.4e-15 84.3 69 59.4
CsaV3_1G002820 Cucumis sativus L. HOM05D000422 ORTHO05D003570 8.3e-15 84.0 73 53.4
Eucgr.B00581 Eucalyptus grandis HOM05D000422 ORTHO05D003570 8.3e-15 84.0 57 71.9
SEGI_16960 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 9.2e-14 80.5 81 55.6
CSS0013994 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D003570 1.2e-13 80.1 80 53.8
PSO675G0733 Papaver somniferum HOM05D000422 ORTHO05D013120 2.0e-13 79.3 52 76.9
Cpa.g.sc94.30 Carica papaya HOM05D000422 ORTHO05D003570 2.7e-13 79.0 60 70.0
FvH4_7g22310 Fragaria vesca HOM05D000422 ORTHO05D003570 4.6e-13 78.2 48 81.2
FAN10G0187 Fragaria x ananassa HOM05D000422 ORTHO05D003570 4.6e-13 78.2 48 81.2
TPR.G28568 Trifolium pratense HOM05D000422 ORTHO05D003570 4.6e-13 78.2 57 70.2
THA.LOC104813887 Tarenaya hassleriana HOM05D000422 ORTHO05D003570 6.0e-13 77.8 80 55.0
MD06G1201200 Malus domestica HOM05D000422 ORTHO05D003570 3.9e-12 75.1 54 70.4
SEGI_29255 Sequoiadendron giganteum HOM05D000422 ORTHO05D003570 8.6e-12 73.9 72 54.2
PSO782G0514 Papaver somniferum HOM05D000422 ORTHO05D013120 1.1e-11 73.6 54 70.4
Peaxi162Scf00013g00518 Petunia axillaris HOM05D000422 ORTHO05D003570 9.5e-11 70.5 78 51.3
Medtr2g099075 Medicago truncatula HOM05D000422 ORTHO05D003570 2.8e-10 68.9 55 65.5
Oeu008250.1 Olea europaea HOM05D000422 ORTHO05D003570 6.2e-10 67.8 68 52.9
Solyc06g082560.3 Solanum lycopersicum HOM05D000422 ORTHO05D003570 1.1e-09 67.0 45 73.3
Sopen06g033960 Solanum pennellii HOM05D000422 ORTHO05D003570 1.1e-09 67.0 45 73.3
CBR_g28800 Chara braunii HOM05D000422 ORTHO05D003570 1.2e-08 63.5 52 57.7
Actinidia18999 Actinidia chinensis HOM05D000422 ORTHO05D013120 4.4e-08 61.6 59 52.5
Hma1.2p1_0322F.1_g124710 Hydrangea macrophylla HOM05D000422 ORTHO05D003570 5.8e-08 61.2 41 73.2
TAR629G1723 Trochodendron aralioides HOM05D000422 ORTHO05D003570 5.8e-08 61.2 34 85.3
Actinidia18997 Actinidia chinensis HOM05D000422 ORTHO05D003570 1.3e-07 60.1 57 54.4
AL1G31100 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 1.7e-07 59.7 61 50.8
Zm00001eb293780 Zea mays HOM05D000422 ORTHO05D003570 2.2e-07 59.3 41 65.9
EL10As3g23319 Beta vulgaris HOM05D000422 ORTHO05D013120 4.9e-07 58.2 44 61.4
AL375U10010 Arabidopsis lyrata HOM05D000422 ORTHO05D003570 6.4e-07 57.8 72 41.7
VMungo1309G1420 Vigna mungo HOM05D000422 ORTHO05D003570 4.1e-06 55.1 61 52.5


User provided reference genes

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