Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 2.3e-110 402.1 192 100.0
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 6.0e-106 387.5 193 96.4
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.1e-104 383.3 192 94.8
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.1e-104 383.3 192 94.8
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.9e-104 382.5 192 94.8
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.3e-104 381.7 192 94.3
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.3e-104 381.3 192 94.8
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.3e-104 381.3 192 94.3
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 5.6e-104 380.9 189 94.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 7.3e-104 380.6 188 95.2
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 9.5e-104 380.2 192 94.8
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.2e-103 379.8 192 94.8
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.2e-103 379.8 192 94.3
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.6e-103 379.4 188 95.2
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 93.8
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.6e-103 379.4 188 95.2
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.6e-103 379.4 188 95.2
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 95.3
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 95.3
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 95.3
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 95.3
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 95.3
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 93.8
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.6e-103 379.4 192 93.2
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-103 379.0 192 94.3
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.1e-103 379.0 192 94.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 3.6e-103 378.3 188 94.7
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 4.7e-103 377.9 186 96.2
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 6.2e-103 377.5 185 96.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 6.2e-103 377.5 188 94.7
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 8.1e-103 377.1 192 91.7
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.1e-102 376.7 188 94.7
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 1.4e-102 376.3 192 93.8
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.4e-102 376.3 192 92.7
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.8e-102 375.9 192 94.3
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 187 95.2
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.4e-102 375.6 192 93.8
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 2.4e-102 375.6 192 93.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.4e-102 375.6 192 93.8
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.0e-102 374.8 192 93.2
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.0e-102 374.8 192 94.3
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 5.2e-102 374.4 192 92.7
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.2e-102 374.4 189 93.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.2e-102 374.4 189 93.1
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 5.2e-102 374.4 185 95.7
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 5.2e-102 374.4 185 95.7
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 8.9e-102 373.6 184 96.7
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 8.9e-102 373.6 185 95.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-101 373.2 185 96.2
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.2e-101 373.2 185 96.2
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.2e-101 373.2 192 92.2
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 186 94.6
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 186 94.6
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 192 93.2
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 95.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 94.6
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 2.6e-101 372.1 190 93.7
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.4e-101 371.3 192 93.8
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 4.4e-101 371.3 186 94.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.4e-101 371.3 188 94.1
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 5.8e-101 370.9 187 93.6
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 5.8e-101 370.9 192 91.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 5.8e-101 370.9 190 92.1
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 7.6e-101 370.5 192 92.2
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 7.6e-101 370.5 190 93.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.9e-101 370.2 190 93.7
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.9e-101 370.2 190 93.7
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 9.9e-101 370.2 193 92.7
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 9.9e-101 370.2 188 92.6
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.3e-100 369.8 189 93.7
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.7e-100 369.4 207 87.4
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 1.7e-100 369.4 190 92.6
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.7e-100 369.4 187 93.0
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.7e-100 369.4 192 92.7
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.2e-100 369.0 192 92.2
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 2.9e-100 368.6 192 91.7
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.9e-100 368.6 192 91.7
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 94.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 2.9e-100 368.6 185 94.1
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 4.9e-100 367.9 192 91.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 4.9e-100 367.9 187 92.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 187 92.0
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 93.0
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.9e-100 367.9 193 92.2
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 92.6
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 6.4e-100 367.5 192 91.7
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 6.4e-100 367.5 184 93.5
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 8.4e-100 367.1 192 91.7
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 8.4e-100 367.1 192 91.1
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-99 366.7 193 90.7
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.1e-99 366.7 188 94.1
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.1e-99 366.7 187 91.4
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.1e-99 366.7 192 89.6
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 190 90.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 190 90.0
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-99 366.3 190 90.0
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.4e-99 366.3 193 90.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 1.9e-99 365.9 187 92.0
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 1.9e-99 365.9 187 92.0
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 1.9e-99 365.9 187 92.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.9e-99 365.9 187 92.0
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 186 91.9
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 187 90.9
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-99 365.5 187 90.9
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.4e-99 365.5 187 90.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.4e-99 365.5 192 91.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.4e-99 365.5 192 91.1
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 3.2e-99 365.2 189 91.0
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 192 91.1
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 187 91.4
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 4.1e-99 364.8 187 90.9
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 9.2e-99 363.6 186 90.9
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 9.2e-99 363.6 186 91.4
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 9.2e-99 363.6 186 90.9
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 91.4
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 91.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.1e-98 362.5 187 89.3
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 2.1e-98 362.5 186 92.5
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 90.9
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 192 90.6
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.5e-98 361.7 186 91.9
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.5e-98 361.7 192 90.1
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 4.6e-98 361.3 185 92.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.3e-97 359.8 193 89.1
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.7e-97 359.4 187 89.8
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.3e-97 359.0 201 87.1
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.0e-97 358.6 187 89.8
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 3.0e-97 358.6 182 91.2
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 3.9e-97 358.2 186 90.3
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 3.9e-97 358.2 187 90.9
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 88.8
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.2e-95 353.2 258 70.5
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 6.2e-95 350.9 182 88.5
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.4e-94 349.7 181 90.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.8e-93 344.4 182 89.0
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.3e-92 343.2 182 87.4
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.7e-89 332.8 187 87.2
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 6.6e-89 330.9 187 80.2
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 4.3e-88 328.2 191 82.7
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.6e-88 327.8 182 85.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 9.6e-88 327.0 162 94.4
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.9e-80 302.8 152 90.8
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.6e-80 301.2 185 78.9
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.4e-78 295.8 144 96.5
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 4.6e-74 281.6 143 89.5
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 7.9e-74 280.8 142 92.3
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.1e-72 276.9 139 91.4
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.7e-68 263.1 130 92.3
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.2e-67 258.8 136 89.7
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.5e-66 255.4 149 83.9
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 3.5e-66 255.4 128 89.1
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.8e-65 253.1 166 77.1
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.0e-65 252.3 191 68.6
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 8.7e-65 250.8 187 70.6
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 6.5e-60 234.6 189 54.5
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 2.1e-58 229.6 188 56.9
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.0e-52 210.7 166 66.9
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 2.7e-50 202.6 157 68.2
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-45 186.8 90 93.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-44 184.1 115 76.5
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-42 176.4 87 90.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.6e-42 175.6 103 79.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.0e-42 174.5 87 89.7
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.4e-41 173.7 90 87.8
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.4e-41 173.7 87 89.7
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.2e-41 171.8 87 89.7
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.8e-41 171.0 87 88.5
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.8e-41 171.0 87 88.5
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.6e-37 159.5 87 86.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.7e-37 157.9 157 54.1
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.7e-36 156.8 102 79.4
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.2e-35 151.4 79 87.3
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.0e-33 147.5 104 73.1
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.4e-33 147.1 69 91.3
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.3e-31 140.6 70 97.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 87.1
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 87.1
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 87.1
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 87.1
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 87.1
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 4.2e-27 125.6 62 87.1
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 4.0e-17 92.4 51 88.2
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 5.7e-16 88.6 44 93.2
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 7.8e-13 78.2 55 72.7


User provided reference genes

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