Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 1.2e-252 876.3 548 100.0
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-161 573.9 552 66.8
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 2.8e-156 556.2 549 67.0
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 3.4e-154 549.3 576 64.1
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 6.4e-153 545.0 560 65.0
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.1e-151 540.0 533 67.5
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.1e-151 540.0 556 67.6
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.9e-150 535.8 550 63.3
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.1e-149 534.3 551 59.7
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 2.5e-149 533.1 561 63.8
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 8.1e-148 528.1 564 64.7
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 8.9e-147 524.6 553 61.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.5e-146 523.9 542 56.8
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.4e-146 522.7 562 63.9
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.3e-145 520.8 524 66.2
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 2.2e-145 520.0 530 62.3
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.9e-145 519.6 551 66.8
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.9e-145 519.6 534 63.1
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 2.9e-145 519.6 532 62.0
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.4e-144 517.3 560 63.6
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.9e-144 516.9 544 62.1
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 3.2e-144 516.2 550 60.5
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.2e-144 515.8 587 62.9
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.7e-143 513.1 542 61.3
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 7.8e-143 511.5 539 61.4
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.0e-142 509.6 599 57.6
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 5.6e-141 505.4 542 59.2
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 9.6e-141 504.6 555 62.5
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.4e-139 500.7 553 59.9
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 1.4e-139 500.7 546 62.5
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 2.4e-139 500.0 583 58.5
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 4.0e-139 499.2 566 62.2
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.0e-139 499.2 549 62.5
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.9e-139 498.4 548 59.1
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.5e-138 497.3 548 65.3
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.0e-138 496.9 552 59.8
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 5.8e-138 495.4 569 61.7
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.9e-138 494.6 545 60.7
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 4.9e-137 492.3 548 61.3
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 3.2e-136 489.6 527 59.0
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 4.2e-136 489.2 537 61.8
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 1.2e-135 487.6 604 54.5
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.6e-135 487.3 543 53.4
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.1e-135 486.9 545 65.7
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.1e-135 486.9 537 63.9
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 4.6e-135 485.7 546 61.9
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 7.9e-135 485.0 561 60.8
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.7e-134 483.8 540 62.8
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.7e-134 483.8 546 59.7
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.3e-134 483.4 548 61.7
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 3.9e-134 482.6 551 57.7
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 5.1e-134 482.3 540 59.4
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 8.7e-134 481.5 538 62.5
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 8.7e-134 481.5 589 57.2
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.1e-133 481.1 541 57.7
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.9e-133 480.3 555 58.2
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 3.3e-133 479.6 541 60.1
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 5.6e-133 478.8 557 59.2
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 7.3e-133 478.4 556 59.9
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 2.8e-132 476.5 544 59.6
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 6.2e-132 475.3 538 59.5
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 8.1e-132 474.9 539 59.9
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 9.0e-131 471.5 541 60.1
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 2.0e-130 470.3 541 59.5
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 5.8e-130 468.8 539 55.3
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 9.9e-130 468.0 542 59.6
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.9e-128 463.8 550 56.0
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 2.4e-128 463.4 544 60.1
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.6e-127 460.7 558 57.3
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.6e-127 460.7 581 50.9
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.3e-126 456.8 554 59.9
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 3.9e-126 456.1 542 59.0
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 2.5e-125 453.4 555 60.2
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 5.6e-125 452.2 544 57.0
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 9.6e-125 451.4 527 54.1
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 9.6e-125 451.4 550 58.0
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 1.3e-124 451.1 539 55.3
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.6e-124 450.7 530 58.3
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.1e-123 448.0 564 55.5
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.8e-123 447.2 523 55.3
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.8e-123 447.2 536 59.5
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 5.3e-123 445.7 552 54.0
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 6.9e-123 445.3 536 54.7
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.2e-122 444.5 562 59.4
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 4.5e-122 442.6 533 58.5
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.0e-121 441.4 611 57.6
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-120 437.2 535 55.1
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.2e-120 436.0 547 53.9
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 5.5e-120 435.6 567 58.0
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 2.1e-119 433.7 570 53.9
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.9e-119 431.8 543 51.4
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.3e-118 430.3 562 56.8
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.3e-118 430.3 541 54.0
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 3.0e-118 429.9 565 49.2
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.3e-117 426.0 544 54.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-116 424.5 564 56.0
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.1e-116 423.7 548 53.6
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 2.4e-115 420.2 532 50.9
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.8e-113 412.9 501 50.1
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.8e-113 412.9 542 53.7
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 6.7e-110 402.1 520 47.5
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 8.7e-110 401.7 541 47.9
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 3.3e-109 399.8 480 55.4
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 3.7e-108 396.4 550 55.3
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 5.3e-107 392.5 520 56.3
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 2.5e-104 383.6 547 53.2
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.6e-103 379.8 542 51.7
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 7.4e-93 345.5 349 63.9
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 7.7e-90 335.5 597 47.6
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.3e-89 334.7 357 63.3
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.1e-83 315.1 539 46.2
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 4.1e-83 313.2 528 40.9
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.5e-80 303.9 493 46.5
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 4.0e-78 296.6 562 41.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.2e-78 296.2 488 42.0
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.5e-77 294.7 371 53.4
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.2e-76 290.8 544 43.8
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 1.2e-74 285.0 571 36.6
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.7e-60 238.0 166 74.7
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.1e-59 235.3 187 66.3
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 3.9e-57 226.9 258 52.7
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 8.6e-57 225.7 147 74.1
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 6.8e-54 216.1 348 46.0
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.3e-52 211.8 241 51.0
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 4.1e-51 206.8 244 48.8
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.6e-50 203.4 366 47.8
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 3.0e-49 200.7 125 84.0
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 9.5e-48 195.7 251 51.0
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 1.5e-40 171.8 188 52.7
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 1.5e-40 171.8 188 52.7
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 1.0e-33 149.1 237 37.6
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.0e-29 134.8 103 72.8
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 6.0e-26 123.2 92 64.1
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.0e-25 120.9 154 50.6
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-23 115.2 149 47.0
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.1e-18 98.2 85 61.2
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 6.0e-18 96.7 245 30.6
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.8e-17 95.1 62 72.6
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 1.1e-14 85.9 89 53.9
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 9.0e-14 82.8 58 70.7
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.5e-13 82.0 77 51.9
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 3.4e-13 80.9 63 73.0
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.9e-11 75.1 79 51.9
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 7.1e-11 73.2 69 56.5
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.2e-10 72.4 66 68.2
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 3.5e-10 70.9 101 42.6
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.3e-07 62.4 37 75.7
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-07 62.0 76 50.0
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.4e-06 58.2 67 53.7


User provided reference genes

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