Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 3.1e-75 285.0 144 100.0
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 1.8e-70 269.2 144 93.8
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.1e-67 260.0 144 91.0
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 9.1e-67 256.9 144 89.6
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 2.7e-66 255.4 144 89.6
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 2.7e-66 255.4 144 89.6
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.0e-65 253.4 142 87.3
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 1.0e-65 253.4 142 87.3
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 1.3e-65 253.1 144 88.9
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 2.3e-65 252.3 142 85.9
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 2.3e-65 252.3 144 86.8
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 6.5e-65 250.8 144 88.2
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 1.1e-64 250.0 145 89.0
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 1.5e-64 249.6 144 87.5
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 1.5e-64 249.6 142 87.3
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.9e-64 249.2 146 89.0
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 1.9e-64 249.2 143 88.8
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 1.9e-64 249.2 157 82.2
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 4.2e-64 248.1 144 86.8
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.2e-64 248.1 145 88.3
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.2e-64 248.1 145 87.6
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 7.2e-64 247.3 142 86.6
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 9.5e-64 246.9 144 89.6
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 1.2e-63 246.5 145 86.2
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 1.6e-63 246.1 144 86.1
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.6e-63 246.1 145 87.6
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.6e-63 246.1 145 87.6
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 1.6e-63 246.1 140 87.9
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 3.6e-63 245.0 146 87.7
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 1.4e-62 243.0 144 84.7
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 1.8e-62 242.7 145 84.1
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 2.3e-62 242.3 134 91.0
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 2.3e-62 242.3 144 84.7
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 3.0e-62 241.9 145 85.5
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 3.0e-62 241.9 144 86.1
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 4.0e-62 241.5 144 85.4
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 4.0e-62 241.5 144 85.4
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 2.0e-61 239.2 145 84.8
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 2.0e-61 239.2 146 83.6
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 2.0e-61 239.2 144 85.4
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.6e-61 238.8 132 89.4
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 2.6e-61 238.8 146 84.2
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 3.4e-61 238.4 144 85.4
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 3.4e-61 238.4 145 84.1
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 3.4e-61 238.4 141 86.5
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 4.4e-61 238.0 145 84.1
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 4.4e-61 238.0 144 84.7
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.4e-61 238.0 141 85.1
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 5.7e-61 237.7 145 84.1
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 5.7e-61 237.7 132 90.9
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 5.7e-61 237.7 145 82.8
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 9.8e-61 236.9 144 84.0
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 9.8e-61 236.9 144 84.0
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 1.3e-60 236.5 145 84.1
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.3e-60 236.5 145 83.4
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 1.7e-60 236.1 145 82.8
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 2.2e-60 235.7 145 82.8
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.8e-60 235.3 144 83.3
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 3.7e-60 235.0 145 82.8
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.7e-60 235.0 145 83.4
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 3.7e-60 235.0 145 84.1
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 6.3e-60 234.2 145 82.8
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 6.3e-60 234.2 144 82.6
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 1.1e-59 233.4 145 83.4
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.1e-59 233.4 145 82.8
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 81.4
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 1.8e-59 232.6 145 81.4
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 4.1e-59 231.5 145 84.8
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 5.4e-59 231.1 145 82.1
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 5.4e-59 231.1 146 82.2
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 7.0e-59 230.7 145 82.8
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 7.0e-59 230.7 144 82.6
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 9.2e-59 230.3 130 86.9
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.6e-58 229.6 144 85.4
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 2.7e-58 228.8 145 81.4
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 4.5e-58 228.0 130 86.9
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 5.9e-58 227.6 146 82.9
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 7.8e-58 227.3 145 81.4
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 82.1
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 5.0e-57 224.6 201 62.2
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 81.4
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 81.4
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 5.0e-57 224.6 146 81.5
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 8.6e-57 223.8 146 82.9
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 1.5e-56 223.0 146 82.2
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 1.9e-56 222.6 123 88.6
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.9e-56 222.6 146 82.2
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 4.3e-56 221.5 146 80.1
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 5.6e-56 221.1 146 81.5
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 7.3e-56 220.7 145 80.7
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 7.3e-56 220.7 146 80.1
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 7.3e-56 220.7 146 81.5
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 9.5e-56 220.3 146 82.9
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 3.6e-55 218.4 144 79.9
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 3.6e-55 218.4 148 81.8
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 3.6e-55 218.4 145 82.8
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 4.7e-55 218.0 148 79.7
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 4.7e-55 218.0 145 79.3
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 8.0e-55 217.2 148 79.7
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.0e-54 216.9 142 81.0
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 1.0e-54 216.9 145 81.4
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 1.0e-54 216.9 145 81.4
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.8e-54 216.1 148 79.1
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 3.0e-54 215.3 148 81.1
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 6.8e-54 214.2 144 78.5
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 1.5e-53 213.0 144 81.2
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.5e-53 213.0 145 78.6
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 1.5e-53 213.0 144 80.6
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 9.8e-53 210.3 142 78.9
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 2.2e-52 209.1 145 79.3
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 8.3e-52 207.2 136 81.6
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 8.3e-52 207.2 128 83.6
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.1e-51 206.8 146 77.4
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 3.2e-51 205.3 152 77.0
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 9.2e-51 203.8 150 76.7
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 3.5e-50 201.8 182 65.9
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 6.0e-50 201.1 147 76.2
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.0e-49 200.3 133 78.9
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 2.3e-49 199.1 144 75.7
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 3.0e-49 198.7 144 75.7
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 3.9e-49 198.4 144 76.4
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 2.5e-48 195.7 143 74.1
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 4.3e-48 194.9 146 77.4
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 4.3e-48 194.9 146 77.4
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 4.3e-48 194.9 146 77.4
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 1.2e-47 193.4 120 85.0
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 2.8e-47 192.2 144 75.7
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 2.8e-47 192.2 145 71.7
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 3.6e-47 191.8 145 76.6
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 4.0e-46 188.3 168 63.7
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.2e-45 186.8 144 73.6
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 1.3e-44 183.3 142 73.2
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 6.4e-44 181.0 124 78.2
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.9e-43 179.5 133 73.7
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 5.4e-43 177.9 144 69.4
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 7.0e-43 177.6 115 81.7
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 9.2e-43 177.2 145 71.0
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 1.6e-42 176.4 140 72.9
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 6.0e-42 174.5 132 71.2
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 6.0e-42 174.5 122 81.1
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.7e-41 172.9 145 66.9
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 1.7e-41 172.9 132 72.0
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 1.7e-41 172.9 122 79.5
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 3.9e-41 171.8 136 75.0
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 6.6e-41 171.0 95 86.3
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 8.6e-41 170.6 135 72.6
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.5e-40 169.1 124 76.6
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 3.3e-40 168.7 146 67.1
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 4.0e-38 161.8 98 86.7
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 3.4e-37 158.7 91 84.6
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 4.4e-37 158.3 145 66.2
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.7e-36 156.4 113 77.0
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 4.9e-36 154.8 111 73.0
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.4e-35 152.5 142 59.2
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 1.6e-34 149.8 103 78.6
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 1.0e-33 147.1 122 71.3
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 4.7e-31 138.3 82 79.3
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.5e-29 133.3 120 65.8
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.5e-29 133.3 120 65.8
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.0e-29 132.9 106 77.4
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 4.9e-28 128.3 144 57.6
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 6.4e-28 127.9 123 57.7
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 2.4e-27 125.9 99 74.7
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 4.1e-27 125.2 134 57.5
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.7e-26 122.5 80 78.8
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 3.5e-26 122.1 76 81.6
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 3.5e-26 122.1 77 80.5
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 3.0e-25 119.0 69 81.2
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.5e-24 115.9 64 85.9
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 3.3e-24 115.5 132 53.0
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 9.6e-24 114.0 132 53.0
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 2.0e-21 106.3 81 74.1
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 2.2e-20 102.8 101 58.4
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 3.9e-17 92.0 45 91.1
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 4.3e-16 88.6 76 68.4
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.3e-09 66.2 35 94.3


User provided reference genes

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