Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 1.6e-96 356.7 274 100.0
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.7e-53 213.8 281 74.7
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 8.4e-53 211.5 281 73.3
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 9.3e-52 208.0 281 72.6
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 9.6e-49 198.0 282 70.6
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 6.2e-48 195.3 279 69.5
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 4.5e-46 189.1 277 65.7
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 4.5e-46 189.1 278 69.8
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 5.8e-46 188.7 276 65.6
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 4.9e-45 185.7 282 68.4
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 6.4e-45 185.3 282 66.7
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 1.4e-44 184.1 284 68.0
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 1.6e-43 180.6 272 69.1
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 3.0e-42 176.4 277 65.0
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 5.1e-42 175.6 279 69.9
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 9.6e-41 171.4 278 66.9
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 1.6e-40 170.6 240 75.8
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 2.8e-40 169.9 290 64.1
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 3.7e-40 169.5 287 67.6
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 1.1e-39 167.9 285 61.4
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 1.4e-39 167.5 285 58.2
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 1.4e-39 167.5 276 69.9
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 1.4e-39 167.5 283 67.8
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 4.0e-39 166.0 285 57.9
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 5.3e-39 165.6 278 69.8
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 1.5e-38 164.1 274 69.7
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 2.0e-38 163.7 276 69.2
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 2.6e-38 163.3 282 65.6
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 1.7e-37 160.6 288 56.9
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 2.2e-37 160.2 283 68.6
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 3.8e-37 159.5 288 66.3
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 1.1e-36 157.9 274 69.3
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 7.1e-36 155.2 256 66.4
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 7.1e-36 155.2 283 57.2
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 1.6e-35 154.1 271 68.6
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 2.1e-35 153.7 283 66.8
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.1e-35 153.7 283 57.2
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 2.1e-35 153.7 273 62.6
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 3.5e-35 152.9 281 65.5
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 3.5e-35 152.9 288 66.7
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 4.6e-35 152.5 281 58.0
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 2.3e-34 150.2 241 66.0
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 3.9e-34 149.4 274 67.5
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 8.7e-34 148.3 283 61.8
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 8.7e-34 148.3 263 60.5
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 1.5e-33 147.5 274 61.3
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 1.9e-33 147.1 266 49.2
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 2.5e-33 146.7 280 60.4
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 2.5e-33 146.7 317 58.0
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 2.5e-33 146.7 281 61.2
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 3.3e-33 146.4 282 63.1
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 5.6e-33 145.6 276 48.9
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 1.6e-32 144.1 287 60.6
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 2.1e-32 143.7 274 64.2
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 6.2e-32 142.1 287 63.8
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 8.2e-32 141.7 275 65.8
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 1.1e-31 141.4 276 64.1
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 1.4e-31 141.0 279 62.0
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 1.4e-31 141.0 277 66.1
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 1.8e-31 140.6 280 63.2
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 1.8e-31 140.6 286 58.0
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 2.4e-31 140.2 296 60.8
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 4.0e-31 139.4 286 63.3
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 6.9e-31 138.7 258 56.6
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 1.2e-30 137.9 151 70.2
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 3.4e-30 136.3 282 60.6
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 5.8e-30 135.6 286 65.4
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 7.6e-30 135.2 275 60.4
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 1.7e-29 134.0 246 70.3
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.2e-29 133.7 151 72.8
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 2.9e-29 133.3 280 60.7
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 3.8e-29 132.9 129 73.6
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 6.5e-29 132.1 283 57.2
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 8.4e-29 131.7 126 75.4
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 8.4e-29 131.7 126 75.4
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 1.1e-28 131.3 306 49.7
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 1.4e-28 131.0 157 75.2
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 2.5e-28 130.2 274 39.1
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 3.2e-28 129.8 156 55.8
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.7e-27 126.7 279 56.6
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 3.5e-27 126.3 104 71.2
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 4.6e-27 125.9 275 57.8
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 6.7e-26 122.1 274 62.8
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 4.3e-25 119.4 284 62.3
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 1.1e-23 114.8 275 63.3
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 1.4e-23 114.4 104 65.4
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 2.4e-23 113.6 275 62.9
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 5.3e-23 112.5 275 62.9
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 2.0e-22 110.5 280 62.1
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 4.5e-22 109.4 278 59.0
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 8.5e-21 105.1 104 63.5
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 8.5e-21 105.1 104 63.5
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 8.5e-21 105.1 307 48.2
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 1.1e-20 104.8 278 58.3
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 1.4e-20 104.4 237 62.9
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 4.3e-17 92.8 292 57.2
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 5.3e-15 85.9 287 53.0
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 9.1e-15 85.1 104 50.0
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 2.9e-13 80.1 81 64.2
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 1.5e-09 67.8 95 48.4
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 3.3e-09 66.6 112 43.8
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.3e-08 64.7 198 36.9
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 1.7e-08 64.3 39 66.7
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 2.8e-08 63.5 108 50.0
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 4.8e-08 62.8 38 65.8
arahy.Tifrunner.gnm1.ann1.4PMG8D Arachis hypogaea HOM05D000368 ORTHO05D009348 5.3e-07 59.3 77 48.1
Dinv24556 Davidia involucrata HOM05D000368 ORTHO05D009348 5.3e-07 59.3 139 64.0
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 2.0e-06 57.4 28 78.6


User provided reference genes

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