Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.9e-148 528.5 255 100.0
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.3e-145 518.8 255 97.6
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 6.2e-135 484.2 255 91.4
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.1e-134 483.4 255 91.4
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.1e-134 483.4 255 91.0
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.5e-133 479.6 255 91.4
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 2.6e-133 478.8 255 91.4
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.6e-133 478.8 255 90.2
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 3.4e-133 478.4 255 89.8
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 5.8e-133 477.6 255 90.2
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.8e-133 477.6 255 90.6
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.3e-132 476.5 255 89.8
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.9e-132 475.3 255 89.0
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 89.0
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 6.4e-132 474.2 255 89.8
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.4e-132 473.8 255 88.6
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.1e-131 473.4 255 89.4
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.4e-131 473.0 255 89.4
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 89.4
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 90.6
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 88.6
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 88.2
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 88.6
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 88.2
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 9.3e-131 470.3 255 87.5
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 88.6
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 2.7e-130 468.8 256 89.1
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 88.2
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 2.7e-130 468.8 255 88.6
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.6
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.6
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.6e-130 468.0 253 88.5
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 88.2
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 89.0
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 88.6
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.8
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.1
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 86.7
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.1e-128 463.4 253 88.1
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 87.5
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 4.3e-128 461.5 306 76.1
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 5.6e-128 461.1 256 87.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 87.5
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 87.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 87.5
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 86.3
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 86.7
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 87.5
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 6.2e-127 457.6 256 86.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 86.7
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 85.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.8e-126 456.1 256 86.7
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 86.7
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 87.5
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 5.3e-126 454.5 256 86.7
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 86.3
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 86.3
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 9.0e-126 453.8 255 85.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.2e-125 453.4 256 86.3
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.5e-125 453.0 256 86.7
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.5e-125 453.0 255 85.9
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.6e-125 452.2 253 86.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 85.1
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.6e-125 452.2 257 85.2
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 84.7
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 4.5e-125 451.4 256 85.9
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 4.5e-125 451.4 255 84.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 5.8e-125 451.1 253 87.0
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 87.1
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 7.6e-125 450.7 255 83.5
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.6e-125 450.7 253 87.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.6e-125 450.7 253 87.0
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 7.6e-125 450.7 254 85.0
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.0e-124 450.3 253 86.6
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.0e-124 450.3 256 85.9
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-124 449.9 256 86.3
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 86.3
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.8e-124 448.4 254 84.3
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.9e-124 448.0 254 84.3
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 4.9e-124 448.0 256 84.8
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 1.1e-123 446.8 253 84.6
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.1e-123 446.8 254 83.1
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 85.1
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.9e-123 446.0 256 84.4
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.5e-123 445.7 256 84.8
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 3.2e-123 445.3 256 84.8
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 84.3
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 3.2e-123 445.3 255 85.5
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 4.2e-123 444.9 255 83.1
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 7.1e-123 444.1 253 85.8
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.6e-122 443.0 257 82.1
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 84.7
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-122 442.6 255 83.9
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.7e-122 442.2 253 83.8
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 2.7e-122 442.2 253 83.4
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 6.1e-122 441.0 255 85.5
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 1.8e-121 439.5 253 85.0
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 3.9e-121 438.3 256 84.0
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.7e-121 437.6 262 82.4
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.1e-120 436.8 252 85.3
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.1e-120 436.8 252 85.3
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 255 82.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 9.7e-120 433.7 257 80.2
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 3.7e-119 431.8 255 83.9
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 8.2e-119 430.6 255 82.4
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.8e-118 429.5 257 79.8
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.2e-116 422.5 250 78.4
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 8.5e-116 420.6 283 74.6
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 9.4e-115 417.2 239 84.9
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.2e-114 416.8 232 81.5
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 4.6e-114 414.8 294 73.8
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.3e-113 412.5 239 84.1
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.7e-111 406.4 219 88.6
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 4.8e-111 404.8 259 78.8
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.0e-108 397.1 248 76.2
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 5.5e-107 391.3 231 77.9
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.4e-105 386.7 319 64.6
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 5.1e-105 384.8 260 74.6
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 6.7e-105 384.4 255 76.9
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.5e-104 383.3 238 74.4
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.4e-104 381.7 240 74.2
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.7e-104 381.3 246 72.8
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 2.4e-102 375.9 253 70.0
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.5e-101 371.7 260 71.2
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 6.5e-100 367.9 255 73.3
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.8e-97 359.8 260 70.0
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 5.2e-97 358.2 200 84.0
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 6.7e-97 357.8 240 70.4
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.7e-95 353.2 240 69.6
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.6e-93 345.9 239 74.1
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 6.3e-87 324.7 250 68.0
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 4.1e-86 322.0 160 94.4
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.8e-81 306.6 161 91.3
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 8.3e-79 297.7 246 59.3
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 8.3e-79 297.7 162 85.8
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.3e-76 290.4 285 58.9
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 5.0e-76 288.5 201 71.6
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 8.6e-76 287.7 171 82.5
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.2e-75 285.4 158 86.7
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.8e-70 270.0 234 52.6
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.8e-70 270.0 162 82.7
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.9e-63 245.4 268 53.4
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 2.8e-58 229.6 135 81.5
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 9.8e-56 221.1 117 88.0
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.9e-54 216.9 116 89.7
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 7.3e-51 204.9 246 42.3
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 5.8e-48 195.3 121 79.3
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 6.4e-47 191.8 101 91.1
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 6.0e-45 185.3 100 90.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 7.3e-43 178.3 211 46.4
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.1e-41 174.5 165 58.8
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 6.8e-41 171.8 100 83.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.4e-38 163.3 89 85.4
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.0e-37 158.7 83 89.2
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.7e-36 157.1 83 85.5
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 3.0e-36 156.4 84 84.5
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.1e-36 155.6 89 82.0
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.1e-35 154.5 89 80.9
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.6e-34 150.6 89 79.8
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.2e-34 148.7 75 90.7
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.2e-32 144.4 81 84.0
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.0e-32 143.7 81 84.0
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 3.4e-32 142.9 97 74.2
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.9e-31 139.0 75 85.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.9e-31 139.0 75 85.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.9e-31 139.0 75 85.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.9e-31 139.0 75 85.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 8.4e-31 138.3 81 80.2
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.9e-30 137.1 75 84.0
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 1.6e-29 134.0 84 78.6
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.0e-29 132.1 75 81.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.5e-27 126.7 76 80.3
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.6e-27 125.6 71 83.1
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 6.9e-25 118.6 82 74.4
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 2.7e-13 80.1 55 70.9
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 5.7e-11 72.4 41 80.5
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 2.5e-06 57.0 30 86.7


User provided reference genes

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