Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 4.0e-66 254.6 127 100.0
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 1.5e-36 156.4 105 69.5
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.5e-36 156.4 128 62.5
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.3e-36 154.8 82 93.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 9.6e-36 153.7 105 70.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.6e-35 152.9 85 84.7
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.6e-35 152.9 86 83.7
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 3.7e-35 151.8 86 84.9
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 3.1e-34 148.7 86 77.9
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.1e-34 148.7 86 81.4
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 5.3e-34 147.9 86 81.4
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 1.5e-33 146.4 99 66.7
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.7e-32 142.9 86 76.7
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 1.4e-31 139.8 98 70.4
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 7.1e-31 137.5 105 61.0
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.6e-30 136.3 84 76.2
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 4.6e-30 134.8 85 75.3
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.6e-30 134.8 83 75.9
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.6e-30 134.8 83 75.9
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.3e-29 133.3 78 76.9
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 6.7e-29 131.0 79 70.9
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.1e-28 130.2 92 62.0
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.9e-28 129.4 121 56.2
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.9e-28 129.4 78 73.1
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.5e-28 129.0 92 65.2
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.5e-28 129.0 77 76.6
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.3e-28 128.6 92 64.1
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 4.3e-28 128.3 78 73.1
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 5.6e-28 127.9 78 74.4
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 5.6e-28 127.9 83 72.3
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 5.6e-28 127.9 112 54.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.3e-27 126.7 91 64.8
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 2.1e-27 125.9 78 73.1
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 2.1e-27 125.9 88 70.5
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.1e-27 125.9 77 70.1
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.8e-27 125.6 77 71.4
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 2.8e-27 125.6 91 64.8
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 2.8e-27 125.6 81 69.1
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 6.2e-27 124.4 108 52.8
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 8.2e-27 124.0 79 69.6
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 8.2e-27 124.0 91 63.7
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.4e-26 123.2 78 73.1
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.8e-26 122.9 81 70.4
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 2.4e-26 122.5 88 68.2
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 2.4e-26 122.5 78 71.8
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 3.1e-26 122.1 83 65.1
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.3e-26 121.3 77 68.8
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 6.9e-26 120.9 78 71.8
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 6.9e-26 120.9 88 65.9
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 9.0e-26 120.6 83 62.7
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.0e-26 120.6 83 67.5
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 9.0e-26 120.6 83 66.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 9.0e-26 120.6 83 65.1
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 9.0e-26 120.6 83 63.9
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.2e-25 120.2 70 81.4
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.5e-25 119.8 78 70.5
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.5e-25 119.8 85 64.7
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-25 119.8 83 67.5
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.6e-25 119.0 83 66.3
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 3.4e-25 118.6 81 67.9
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.5e-25 118.2 83 67.5
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 4.5e-25 118.2 78 65.4
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 5.8e-25 117.9 76 72.4
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 7.6e-25 117.5 78 64.1
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 7.6e-25 117.5 78 67.9
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.0e-24 117.1 78 70.5
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-24 116.7 79 68.4
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-24 116.7 79 68.4
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-24 116.7 79 68.4
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.2e-24 115.9 80 61.2
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 2.9e-24 115.5 79 65.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.9e-24 115.5 102 52.9
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 2.9e-24 115.5 83 62.7
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 3.8e-24 115.2 78 65.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 4.9e-24 114.8 77 64.9
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 6.5e-24 114.4 78 66.7
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 6.5e-24 114.4 70 77.1
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.1e-23 113.6 104 51.0
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.9e-23 112.8 83 60.2
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 2.5e-23 112.5 78 66.7
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 2.5e-23 112.5 73 68.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.5e-23 111.3 72 69.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.6e-22 109.8 79 63.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.6e-22 109.8 77 62.3
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.1e-22 109.4 89 61.8
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.1e-22 109.4 77 62.3
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.1e-22 109.4 78 64.1
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.1e-22 109.4 78 62.8
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.1e-22 109.4 78 62.8
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 3.5e-22 108.6 80 58.8
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 6.0e-22 107.8 77 61.0
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.9e-22 107.5 77 59.7
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 7.9e-22 107.5 77 59.7
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.1 79 58.2
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.1 79 58.2
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.3e-21 106.7 79 58.2
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 2.3e-21 105.9 79 57.0
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 3.9e-21 105.1 77 61.0
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 8.7e-21 104.0 77 57.1
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 4.3e-20 101.7 82 59.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 5.7e-20 101.3 77 58.4
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 5.7e-20 101.3 72 62.5
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 5.7e-20 101.3 78 55.1
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.3e-19 100.1 77 58.4
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.8e-19 99.0 72 61.1
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 3.7e-19 98.6 63 69.8
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.4e-18 96.7 90 51.1
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.4e-18 96.7 90 51.1
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.4e-18 96.7 90 51.1
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.4e-18 96.7 76 55.3
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.4e-18 96.7 83 45.8
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 3.1e-18 95.5 91 49.5
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.1e-18 95.1 80 53.8
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.2e-17 93.6 90 47.8
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.2e-17 93.6 90 47.8
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 3.4e-17 92.0 90 46.7
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 3.8e-16 88.6 74 59.5
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 6.5e-16 87.8 78 44.9
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 8.5e-16 87.4 51 72.5
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.9e-15 86.3 79 53.2
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 3.2e-15 85.5 46 76.1
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.2e-15 85.1 62 62.9
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.7e-14 82.4 79 44.3
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 2.3e-13 79.3 55 63.6
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.3e-13 79.3 54 64.8
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.9e-12 76.3 59 55.9
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.2e-09 67.0 46 60.9
SGA_v2.0_scaffold130G34329 Striga asiatica HOM05D001969 ORTHO05D009003 4.5e-09 65.1 53 58.5
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.1e-07 60.5 40 60.0
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.2e-07 58.5 83 37.3
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 4.7e-06 55.1 77 31.2
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 4.7e-06 55.1 73 34.2


User provided reference genes

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