Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 1.8e-282 975.3 522 100.0
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.0e-232 810.1 514 83.9
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 6.6e-232 807.4 513 80.7
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 9.5e-231 803.5 513 79.3
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 2.8e-230 802.0 514 83.3
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.4e-229 799.7 520 81.9
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 5.2e-229 797.7 514 83.5
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 2.6e-228 795.4 514 83.3
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 2.0e-225 785.8 516 80.2
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.0e-225 785.8 522 75.7
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.7e-225 785.4 512 76.6
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 6.0e-225 784.3 514 78.0
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 1.7e-224 782.7 550 77.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 2.3e-224 782.3 523 76.3
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 3.0e-224 781.9 517 77.2
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 3.9e-224 781.6 522 77.0
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 6.6e-224 780.8 543 79.0
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 6.6e-224 780.8 556 77.0
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 1.1e-223 780.0 514 81.7
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.9e-223 779.2 514 79.6
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.3e-223 778.5 518 76.8
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.6e-222 776.2 513 76.4
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.6e-222 776.2 514 77.4
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 3.6e-222 775.0 514 76.5
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.4e-221 773.1 512 75.4
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 5.2e-221 771.2 514 74.9
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 3.4e-220 768.5 517 74.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 3.2e-218 761.9 513 76.6
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 7.1e-218 760.8 523 73.8
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.6e-217 759.6 517 73.9
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.6e-217 758.1 518 73.0
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 2.3e-216 755.7 514 74.9
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 8.6e-216 753.8 514 73.5
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 2.8e-214 748.8 512 74.4
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 2.8e-214 748.8 512 74.4
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 3.6e-214 748.4 512 74.2
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 3.6e-214 748.4 512 74.2
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.1e-213 746.9 512 72.5
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 2.4e-213 745.7 512 75.2
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 4.0e-213 745.0 512 73.8
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 4.0e-213 745.0 484 77.9
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 5.2e-213 744.6 512 74.4
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 5.2e-213 744.6 512 74.4
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 5.2e-213 744.6 512 74.4
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 5.2e-213 744.6 512 74.2
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 6.8e-213 744.2 512 74.4
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 6.8e-213 744.2 512 74.2
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.5e-212 743.0 512 74.2
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.5e-212 743.0 512 74.2
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.0e-212 742.7 512 79.3
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 3.4e-212 741.9 547 69.1
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 4.4e-212 741.5 538 70.8
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.7e-211 739.6 520 72.3
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 6.4e-211 737.6 515 72.6
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 3.2e-210 735.3 518 71.8
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 7.1e-210 734.2 512 78.1
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 2.1e-209 732.6 513 72.1
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.7e-209 732.3 513 77.2
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 3.5e-209 731.9 512 71.5
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 3.5e-209 731.9 512 71.9
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.6e-209 731.5 515 72.0
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 6.0e-209 731.1 514 73.0
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 7.8e-209 730.7 521 72.6
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.3e-208 729.2 535 69.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 6.6e-208 727.6 515 71.3
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 8.7e-208 727.2 525 77.3
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.5e-207 726.5 515 71.3
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 3.3e-207 725.3 517 75.2
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 4.3e-207 724.9 520 71.5
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.6e-206 723.0 512 77.3
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 2.1e-206 722.6 515 70.5
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.1e-205 720.3 526 71.5
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.8e-205 719.5 523 70.2
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 4.4e-204 714.9 521 71.8
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.3e-203 713.4 515 70.9
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 1.7e-203 713.0 521 70.4
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 4.2e-202 708.4 456 76.3
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.6e-201 706.4 495 72.5
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 4.6e-201 704.9 521 70.1
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 6.0e-201 704.5 512 75.6
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.0e-200 703.7 513 69.6
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.1e-199 700.3 512 71.1
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 7.3e-199 697.6 513 69.0
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 1.6e-198 696.4 514 71.4
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 3.1e-197 692.2 500 71.0
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 3.1e-197 692.2 629 64.5
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.3e-197 691.4 521 68.3
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 5.3e-197 691.4 513 68.8
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 4.9e-195 684.9 519 69.9
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 4.2e-194 681.8 513 73.7
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 6.0e-193 677.9 523 66.7
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 8.7e-192 674.1 479 70.4
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.1e-191 673.7 482 71.6
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.4e-188 662.1 522 68.4
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 9.9e-188 660.6 517 70.8
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 2.2e-187 659.4 553 65.6
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 6.4e-187 657.9 522 68.0
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 3.9e-184 648.7 417 81.8
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 3.9e-184 648.7 519 65.3
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 6.7e-184 647.9 523 65.4
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 2.0e-180 636.3 528 63.1
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 1.7e-179 633.3 546 63.0
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.1e-178 630.6 397 79.1
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.3e-176 623.6 485 67.0
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 6.1e-169 598.2 512 60.7
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 1.1e-167 594.0 512 60.2
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 3.3e-167 592.4 458 69.4
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 9.7e-167 590.9 508 62.2
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 4.8e-166 588.6 397 73.3
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 1.7e-163 580.1 591 57.0
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.9e-162 576.6 514 60.9
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 9.7e-159 564.3 446 64.8
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.1e-157 560.8 396 72.0
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.1e-157 560.8 530 54.7
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.2e-153 547.4 522 55.2
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.2e-153 547.4 522 55.2
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.0e-153 544.7 530 53.4
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 5.7e-151 538.5 497 58.6
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.1e-149 534.3 371 72.8
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.3e-149 531.9 318 82.4
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 9.7e-143 511.1 519 52.0
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 6.1e-137 491.9 497 54.3
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 8.9e-128 461.5 442 57.5
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 6.2e-113 412.1 312 66.0
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.4e-112 411.0 278 83.5
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.1e-99 365.9 254 73.2
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.5e-90 337.0 233 72.1
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.4e-87 326.6 219 77.2
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 3.7e-73 280.0 191 73.3
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 7.6e-71 272.3 172 76.2
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.8e-67 261.2 198 67.2
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.7e-65 253.4 147 85.7
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.8e-65 253.1 491 34.4
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.4e-64 250.8 162 77.8
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.8e-63 246.1 490 33.7
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.3e-62 245.0 479 32.4
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.8e-62 243.4 494 32.4
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.3e-58 229.9 476 31.3
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.4e-56 224.2 466 32.0
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 5.3e-56 223.0 308 42.9
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 1.0e-54 218.8 166 68.1
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.8e-54 216.9 125 87.2
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 7.2e-53 212.6 126 84.9
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.8e-51 208.0 140 74.3
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.3e-50 203.8 421 29.9
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 7.4e-50 202.6 121 84.3
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 8.2e-49 199.1 471 30.4
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 2.6e-47 194.1 124 78.2
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 2.6e-47 194.1 125 74.4
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 3.3e-42 177.2 126 64.3
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.7e-41 174.9 334 39.5
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.1e-40 172.2 422 28.2
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 9.1e-40 169.1 100 83.0
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 1.8e-35 154.8 107 77.6
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 5.2e-35 153.3 107 71.0
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 7.4e-34 149.4 324 35.5
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 1.2e-31 142.1 263 32.7
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.5e-31 140.6 149 50.3
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 2.9e-30 137.5 84 78.6
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 4.8e-25 120.2 65 89.2
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 8.3e-25 119.4 80 75.0
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.1e-24 119.0 74 68.9
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 3.8e-22 110.5 61 82.0
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 2.5e-21 107.8 59 91.5
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 7.2e-21 106.3 146 43.2
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 6.1e-20 103.2 62 82.3
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 2.2e-17 94.7 168 29.8
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 8.0e-12 76.3 71 54.9
BcaC01g01194 Brassica carinata HOM05D003674 ORTHO05D004226 4.4e-10 70.5 58 62.1
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 4.4e-10 70.5 63 60.3
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 7.0e-08 63.2 270 27.0
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.2e-07 62.4 223 24.2
Nitab4.5_0012835g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.7e-06 58.5 96 37.5


User provided reference genes

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