Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.4e-174 616.3 336 100.0
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.8e-121 439.9 324 76.5
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 2.0e-117 426.4 319 74.6
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.1e-115 420.6 325 70.2
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.5e-115 420.2 326 69.6
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 5.5e-115 418.3 329 71.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 7.2e-115 417.9 326 72.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 7.2e-115 417.9 330 73.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.6e-114 415.6 313 71.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.0e-113 414.1 330 73.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 2.3e-113 412.9 311 73.3
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.0e-113 412.5 328 68.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 5.2e-113 411.8 334 72.5
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.7e-112 408.3 330 72.4
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 7.5e-112 407.9 324 69.1
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 8.3e-111 404.4 321 68.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 2.4e-110 402.9 304 70.7
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.5e-109 398.7 338 69.5
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 7.7e-109 397.9 327 70.6
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.0e-108 397.5 290 71.0
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 2.3e-108 396.4 304 70.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.5e-107 393.7 313 68.1
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 7.2e-107 391.3 323 67.5
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 2.1e-106 389.8 321 69.5
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 2.1e-106 389.8 307 69.4
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 4.7e-106 388.7 298 68.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 4.7e-106 388.7 292 71.6
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.4e-105 387.1 310 71.6
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.0e-105 386.0 269 76.2
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 3.0e-105 386.0 307 69.7
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 4.0e-105 385.6 335 64.5
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.8e-105 384.8 308 69.8
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.8e-105 384.8 308 69.8
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 8.9e-105 384.4 304 70.1
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.6e-104 382.9 324 66.0
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 5.7e-104 381.7 300 69.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 5.7e-104 381.7 334 64.1
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 9.8e-104 380.9 298 70.5
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.7e-103 380.2 319 63.3
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.7e-103 380.2 334 67.1
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 4.9e-103 378.6 305 69.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.1e-102 377.5 321 63.2
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-102 376.7 310 70.3
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 3.1e-102 375.9 286 70.6
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 6.6e-100 368.2 323 66.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 6.6e-100 368.2 296 67.6
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.5e-99 367.1 261 73.6
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.5e-99 367.1 284 68.7
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.6e-98 362.5 274 69.3
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 6.1e-98 361.7 276 69.2
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 5.2e-97 358.6 302 67.2
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.2e-96 357.5 296 67.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.4e-96 355.9 306 63.7
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 3.4e-96 355.9 298 67.8
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 5.8e-96 355.1 304 68.4
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.9e-95 352.1 280 67.9
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 6.4e-95 351.7 333 61.0
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 4.1e-94 349.0 328 62.2
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.0e-93 346.7 255 68.6
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 4.6e-93 345.5 221 78.3
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 4.6e-93 345.5 347 62.2
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.3e-92 344.0 296 66.2
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.7e-92 343.6 271 72.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.7e-92 343.6 252 69.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.7e-92 343.6 364 59.1
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.3e-92 343.2 244 71.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.9e-92 342.4 222 77.0
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.9e-92 342.4 321 61.1
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 9.5e-91 337.8 329 61.4
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.7e-90 335.5 276 67.8
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 6.2e-90 335.1 299 61.5
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.1e-89 334.3 331 55.3
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 3.1e-89 332.8 335 60.6
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 6.8e-89 331.6 333 60.4
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.8e-89 331.6 313 63.9
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-88 330.9 340 59.4
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 3.4e-88 329.3 340 59.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 7.5e-88 328.2 297 65.7
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.2e-87 326.6 335 58.2
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 8.3e-87 324.7 289 60.9
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.9e-86 323.6 335 57.3
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 9.2e-86 321.2 341 53.7
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 9.2e-86 321.2 240 70.4
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.7e-85 319.7 270 68.1
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.5e-85 319.3 324 57.4
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.7e-84 317.0 318 61.6
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 3.9e-84 315.8 333 59.8
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 3.9e-84 315.8 337 59.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 6.6e-84 315.1 336 58.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 6.6e-84 315.1 336 58.3
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 8.6e-84 314.7 333 59.5
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.1e-83 314.3 339 57.2
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.9e-83 313.5 293 62.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 7.3e-83 311.6 298 62.1
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.8e-82 309.7 285 61.1
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.8e-81 307.0 325 55.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.1e-81 306.2 309 59.9
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.1e-81 306.2 309 59.9
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 3.1e-81 306.2 314 56.4
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.6e-80 303.1 309 59.9
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.7e-79 300.4 315 55.2
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.7e-79 300.4 326 58.0
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.1e-78 297.7 265 63.4
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.3e-75 286.2 331 55.6
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 3.6e-74 282.7 326 54.0
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.6e-72 276.6 323 54.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 3.8e-71 272.7 233 58.4
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 7.1e-70 268.5 256 62.1
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.1e-69 266.9 247 59.5
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.0e-69 265.4 189 69.3
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.6e-64 250.0 379 50.7
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.0e-60 238.0 323 45.2
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 2.5e-59 233.4 138 85.5
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.2e-56 224.6 321 45.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.6e-56 223.4 237 48.1
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.9e-53 211.8 302 44.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.8e-50 203.4 181 63.5
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 3.1e-49 199.9 266 46.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.9e-46 190.7 135 66.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 5.1e-44 182.6 124 74.2
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.5e-35 154.5 268 37.7
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 9.7e-35 151.8 177 43.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.8e-34 150.2 307 33.2
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.4e-33 147.1 95 73.7
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.4e-33 147.1 97 72.2
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.8e-26 123.6 174 47.7
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.8e-25 120.9 197 35.0
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-23 114.8 300 29.3
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.2e-23 114.0 124 54.0
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 1.9e-22 110.9 70 74.3
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.0e-12 77.0 185 28.6
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 6.7e-12 75.9 226 27.4
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.5e-11 74.7 63 69.8
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.0e-11 74.3 394 25.1
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 5.7e-11 72.8 199 30.2
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 4.5e-08 63.2 68 57.4
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.0e-07 62.0 102 29.4
MCO02G422 Micromonas commoda HOM05D005493 ORTHO05D269126 7.2e-06 55.8 191 22.5


User provided reference genes

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