Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 3.2e-245 851.3 427 100.0
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 8.2e-172 607.4 442 71.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.9e-145 519.2 406 65.3
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 4.2e-144 515.4 418 63.2
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 4.0e-142 508.8 420 62.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.2e-138 497.3 412 62.4
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 4.5e-138 495.4 412 62.6
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 7.7e-138 494.6 412 63.1
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.4e-136 487.6 422 61.8
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.2e-135 487.3 423 59.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-135 486.9 422 60.2
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 3.6e-135 485.7 425 59.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.7e-135 485.3 418 59.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.8e-134 483.4 424 60.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 5.2e-134 481.9 411 63.0
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 2.8e-132 476.1 414 62.8
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 5.4e-131 471.9 423 60.3
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.7e-130 469.5 424 60.1
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.9e-129 466.1 421 59.1
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 6.6e-129 464.9 423 60.5
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.9e-128 463.4 426 58.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.9e-128 463.4 426 58.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.8e-126 454.9 426 55.2
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 6.3e-124 448.4 418 56.0
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.7e-122 443.0 416 57.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.9e-122 441.8 417 56.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.9e-122 441.8 422 56.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 5.9e-122 441.8 421 54.2
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.8e-121 439.1 434 55.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.9e-120 436.8 417 54.7
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.5e-120 436.4 464 51.3
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 5.6e-120 435.3 422 55.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 2.8e-119 433.0 425 56.7
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 6.1e-119 431.8 416 56.0
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.4e-118 430.6 424 56.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 2.3e-118 429.9 427 56.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 3.1e-118 429.5 419 55.6
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 8.9e-118 427.9 419 55.4
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.5e-117 427.2 422 55.7
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 2.0e-117 426.8 415 55.7
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.0e-117 426.8 423 56.3
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.2e-116 423.3 418 54.3
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.1e-115 421.0 417 56.1
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 7.0e-115 418.3 478 47.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 1.6e-114 417.2 411 55.2
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.0e-114 416.8 443 51.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.7e-114 416.4 453 52.8
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 3.5e-114 416.0 410 55.4
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.9e-112 410.2 421 52.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.9e-112 410.2 413 53.8
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 4.3e-112 409.1 438 52.7
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 5.6e-112 408.7 423 54.4
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.1e-110 404.4 420 52.4
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.3e-110 403.3 434 52.5
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.0e-110 402.5 431 50.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-109 400.6 425 50.1
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.8e-109 398.7 419 52.7
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 5.8e-109 398.7 416 51.4
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.4e-108 395.2 467 47.8
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.9e-107 393.7 414 51.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.2e-107 392.9 432 51.2
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 3.2e-107 392.9 419 51.3
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.2e-107 392.9 416 53.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.2e-107 392.9 418 51.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.2e-106 391.0 423 51.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.6e-106 390.6 417 50.1
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.7e-106 389.8 407 50.6
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.6e-106 389.0 440 50.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 6.0e-106 388.7 432 53.5
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 7.8e-106 388.3 416 51.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.3e-105 387.5 352 56.8
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.1e-104 384.4 420 52.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 7.3e-104 381.7 441 49.4
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 7.3e-104 381.7 367 55.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.2e-103 380.9 412 49.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-103 380.6 448 48.9
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.6e-103 379.4 442 48.4
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 4.7e-103 379.0 414 50.0
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 8.1e-103 378.3 411 48.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.2e-102 375.6 409 48.4
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 9.9e-101 371.3 440 49.1
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-100 370.5 411 48.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 3.5e-98 362.8 470 45.7
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 8.6e-97 358.2 408 49.0
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.5e-96 357.5 410 47.6
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 9.5e-96 354.8 457 45.1
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.1e-95 353.6 417 45.6
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.8e-94 348.6 421 48.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.6e-93 346.7 406 46.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.4e-93 346.3 404 46.3
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 7.6e-93 345.1 412 45.4
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 7.6e-93 345.1 412 45.4
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.3e-92 344.4 413 46.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-92 344.0 407 46.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.9e-92 342.4 412 44.9
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 8.4e-92 341.7 415 46.0
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.2e-87 325.5 414 44.7
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.8e-86 323.9 401 43.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 4.0e-86 322.8 408 43.1
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.8e-84 316.2 240 62.1
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 9.3e-83 311.6 405 43.7
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 3.5e-82 309.7 403 41.4
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.6e-81 305.4 300 57.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.9e-80 303.9 421 42.5
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 7.3e-80 302.0 400 42.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.1e-79 298.5 432 43.1
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-75 287.7 414 39.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.6e-74 284.3 409 40.1
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.7e-63 246.5 180 63.3
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.1e-62 243.4 174 63.2
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.9e-62 242.3 408 38.0
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-60 238.0 241 56.8
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.2e-60 237.3 239 58.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 8.4e-60 235.3 244 55.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.3e-57 228.0 237 49.4
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-52 211.5 314 42.0
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.3e-49 200.7 279 41.6
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.3e-48 196.4 144 63.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.7e-47 194.5 248 50.0
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.2e-47 194.1 248 50.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.2e-42 178.3 247 42.5
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 3.6e-42 176.8 320 35.3
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-41 174.9 336 33.3
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.0e-40 171.0 283 35.3
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 5.3e-38 162.9 227 40.1
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.6e-34 150.2 214 39.3
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.7e-34 149.8 275 34.2
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 6.1e-34 149.4 244 38.5
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-33 147.5 98 65.3
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-33 147.5 98 65.3
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.8e-30 137.9 148 47.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 9.4e-27 125.6 286 35.0
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-26 124.8 210 37.6
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 5.7e-24 116.3 316 27.5
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.3e-23 112.8 99 57.6
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-23 112.5 258 29.5
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 7.0e-22 109.4 263 30.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 7.0e-22 109.4 263 30.4
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.0e-21 107.8 257 30.4
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-20 105.1 263 30.0
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.3e-20 105.1 263 30.0
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.3e-20 105.1 263 30.0
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.5e-20 102.4 119 56.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.2e-09 66.6 54 51.9
MCO05G196 Micromonas commoda HOM05D004947 ORTHO05D006077 9.2e-06 55.8 282 22.7


User provided reference genes

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