Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 3.2e-36 154.5 72 100.0
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 9.3e-36 152.9 72 98.6
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 95.8
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 3.5e-35 151.0 72 95.8
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 95.8
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 95.8
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 95.8
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 4.6e-35 150.6 72 95.8
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 94.4
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 94.4
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 94.4
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 1.0e-34 149.4 72 94.4
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 1.0e-34 149.4 72 94.4
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 95.8
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 95.8
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 95.8
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 95.8
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 95.8
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 3.0e-34 147.9 71 94.4
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 3.0e-34 147.9 71 94.4
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 91.7
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 93.1
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 1.5e-33 145.6 71 93.0
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 90.3
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 91.7
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 91.7
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 91.7
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 91.7
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 91.7
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 93.1
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 93.1
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 95.7
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 94.2
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 94.2
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.3e-33 144.4 69 94.2
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.3e-33 144.4 69 94.2
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 88.9
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 90.3
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 90.3
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 71 90.1
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 94.2
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 94.2
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 94.2
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 69 92.8
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 7.4e-33 143.3 72 90.3
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.4e-33 143.3 69 91.3
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 7.4e-33 143.3 69 94.2
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 7.4e-33 143.3 72 88.9
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 89.9
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 89.9
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 89.9
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 88.9
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 87.5
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 1.6e-32 142.1 72 91.7
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 2.1e-32 141.7 71 91.5
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 91.3
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 2.8e-32 141.4 72 87.5
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 3.7e-32 141.0 72 90.3
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 3.7e-32 141.0 72 90.3
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 89.9
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 3.1e-31 137.9 64 96.9
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 4.0e-31 137.5 71 87.3
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 4.0e-31 137.5 84 79.8
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 5.3e-31 137.1 63 98.4
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 6.9e-31 136.7 64 95.3
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 9.0e-31 136.3 63 98.4
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 9.0e-31 136.3 64 95.3
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 9.0e-31 136.3 64 95.3
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 9.0e-31 136.3 64 95.3
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.2e-30 136.0 64 95.3
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 1.2e-30 136.0 63 96.8
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 1.2e-30 136.0 63 96.8
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 1.2e-30 136.0 63 96.8
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 1.5e-30 135.6 64 93.8
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 1.5e-30 135.6 64 93.8
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 1.5e-30 135.6 64 96.9
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 2.6e-30 134.8 64 93.8
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 2.6e-30 134.8 63 95.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.6e-30 134.8 65 93.8
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 4.5e-30 134.0 68 89.7
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.5e-30 134.0 72 87.5
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 5.8e-30 133.7 64 93.8
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 5.8e-30 133.7 69 88.4
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 5.8e-30 133.7 64 93.8
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 1.0e-29 132.9 85 75.3
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 1.3e-29 132.5 71 83.1
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 2.2e-29 131.7 64 92.2
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.8e-29 131.0 67 89.6
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.8e-29 131.0 67 89.6
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 6.5e-29 130.2 69 88.4
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 1.1e-28 129.4 67 86.6
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 1.9e-28 128.6 104 62.5
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 2.5e-28 128.3 67 82.1
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 1.3e-26 122.5 58 96.6
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 3.9e-26 120.9 124 52.4
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.9e-25 118.6 57 94.7
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 4.3e-25 117.5 56 94.6
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.1e-24 115.2 53 96.2
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.1e-24 115.2 59 86.4
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 4.8e-24 114.0 57 91.2
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 4.8e-24 114.0 72 75.0
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 1.4e-23 112.5 141 47.5
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.5e-22 109.0 53 90.6
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.5e-22 109.0 53 90.6
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.0e-21 106.3 53 86.8
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 1.2e-19 99.4 72 72.2
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 9.7e-17 89.7 42 92.9
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 9.7e-17 89.7 42 92.9
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 6.3e-16 87.0 63 60.3
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 8.2e-16 86.7 62 58.1
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 5.3e-15 84.0 46 84.8
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 6.9e-15 83.6 88 52.3
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.2e-12 74.7 33 93.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 5.5e-12 73.9 32 96.9
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 1.6e-11 72.4 32 93.8
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 1.6e-11 72.4 32 93.8
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 1.6e-11 72.4 55 67.3
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.6e-11 72.4 32 93.8
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 2.1e-11 72.0 32 93.8
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 4.6e-11 70.9 32 87.5
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 2.3e-10 68.6 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.3e-10 68.6 32 96.9
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 8.8e-10 66.6 32 90.6
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 2.0e-09 65.5 40 75.0


User provided reference genes

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