Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 3.7e-102 376.3 362 100.0
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 1.1e-93 348.2 257 94.9
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 7.6e-63 245.7 257 70.8
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.9e-62 243.8 257 69.3
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 3.2e-61 240.4 257 70.8
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.5e-50 204.1 257 64.6
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 2.1e-44 184.5 257 65.4
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 6.0e-44 183.0 135 66.7
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 2.5e-42 177.6 135 63.7
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.3e-42 177.2 223 46.6
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 4.8e-41 173.3 137 64.2
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 1.4e-40 171.8 122 67.2
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 5.3e-40 169.9 121 67.8
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 4.5e-39 166.8 139 62.6
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 1.3e-38 165.2 139 61.9
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 1.7e-38 164.9 137 62.8
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.1e-37 162.2 122 63.9
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 1.0e-35 155.6 116 66.4
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 2.5e-34 151.0 108 67.6
Gorai.005G176400 Gossypium raimondii HOM05D007686 ORTHO05D009709 1.8e-32 144.8 230 57.8
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 1.2e-31 142.1 223 65.9
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 2.2e-30 137.9 257 58.4
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 4.9e-30 136.7 249 59.4
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 6.0e-28 129.8 257 57.2
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 2.2e-25 121.3 120 45.8
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 3.7e-25 120.6 257 56.0
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 5.3e-24 116.7 80 63.8
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 2.6e-23 114.4 257 54.1
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 3.4e-23 114.0 79 68.4
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 3.4e-23 114.0 254 55.1
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 4.5e-23 113.6 79 64.6
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 1.3e-22 112.1 80 65.0
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 1.7e-22 111.7 81 63.0
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 6.5e-22 109.8 257 53.3
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 8.5e-22 109.4 77 63.6
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.1e-21 109.0 258 53.1
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.6e-20 105.1 83 62.7
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 6.1e-20 103.2 223 58.7
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.4e-19 102.1 67 67.2
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 1.5e-18 98.6 79 60.8
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 2.5e-18 97.8 81 55.6
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 4.3e-18 97.1 80 56.2
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 5.7e-18 96.7 67 65.7
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 5.7e-18 96.7 67 65.7
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.7e-17 95.1 61 70.5
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.7e-17 95.1 69 62.3
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 2.2e-17 94.7 75 61.3
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 2.2e-17 94.7 58 72.4
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 2.2e-17 94.7 77 61.0
Gohir.D02G157000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 6.3e-17 93.2 60 73.3
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 1.4e-16 92.0 256 52.0
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 1.4e-16 92.0 60 70.0
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 2.4e-16 91.3 66 62.1
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 4.1e-16 90.5 256 41.0
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 4.1e-16 90.5 256 51.6
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 4.1e-16 90.5 256 51.6
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 9.1e-16 89.4 256 51.6
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 9.1e-16 89.4 256 51.6
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 2.0e-15 88.2 54 70.4
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 2.0e-15 88.2 54 70.4
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 2.6e-15 87.8 256 50.8
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 2.6e-15 87.8 256 50.8
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 2.6e-15 87.8 63 61.9
Oeu056704.1 Olea europaea HOM05D007686 ORTHO05D009709 2.6e-15 87.8 61 68.9
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 4.5e-15 87.0 256 51.2
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.9e-15 86.7 59 66.1
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 7.7e-15 86.3 256 50.8
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.3e-14 85.5 256 50.8
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 3.8e-14 84.0 255 51.0
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 3.8e-14 84.0 66 59.1
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 6.5e-14 83.2 58 63.8
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 8.5e-14 82.8 256 50.4
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.1e-13 82.4 72 55.6
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 1.1e-13 82.4 59 62.7
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.5e-13 81.3 74 54.1
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 9.4e-13 79.3 257 49.8
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 9.4e-13 79.3 257 49.8
Ah.10g031010 Amaranthus hybridus HOM05D007686 ORTHO05D009709 3.6e-12 77.4 54 70.4
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 4.7e-12 77.0 66 57.6
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 2.3e-11 74.7 53 64.2
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 2.3e-11 74.7 256 48.8
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 5.1e-11 73.6 256 49.6
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 8.8e-11 72.8 79 41.8
Peaxi162Scf00207g01213 Petunia axillaris HOM05D007686 ORTHO05D009709 1.1e-10 72.4 51 62.7
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 3.3e-10 70.9 61 55.7
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 5.7e-10 70.1 42 71.4
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 2.8e-09 67.8 47 66.0
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 1.1e-08 65.9 100 38.0
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 1.1e-08 65.9 56 55.4
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.2e-07 62.4 48 62.5
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 3.5e-07 60.8 53 54.7
SEGI_18114 Sequoiadendron giganteum HOM05D007686 ORTHO05D009709 5.9e-07 60.1 59 47.5
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 5.9e-07 60.1 41 61.0
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.0e-06 59.3 109 28.4
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.3e-06 58.9 46 58.7
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 2.2e-06 58.2 52 53.8
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 2.2e-06 58.2 253 19.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 2.9e-06 57.8 253 19.0
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 2.9e-06 57.8 165 27.3
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 5.0e-06 57.0 253 19.8
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 5.0e-06 57.0 244 20.1
Carub.0002s0151 Capsella rubella HOM05D000162 ORTHO05D000090 6.5e-06 56.6 122 29.5
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 6.5e-06 56.6 253 19.4
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 8.5e-06 56.2 253 19.8


User provided reference genes

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