Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.8e-34 148.7 72 100.0
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 5.3e-23 110.5 72 73.6
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 4.6e-19 97.4 72 65.3
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.1e-19 97.1 72 65.3
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.1e-19 97.1 72 65.3
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.1e-19 97.1 72 65.3
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 7.9e-19 96.7 71 66.2
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 7.9e-19 96.7 72 63.9
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 7.9e-19 96.7 72 63.9
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.0e-18 96.3 72 63.9
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 1.3e-18 95.9 72 65.3
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.3e-18 95.1 72 62.5
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 3.0e-18 94.7 72 61.1
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.9e-18 94.4 72 59.7
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 3.9e-18 94.4 72 59.7
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 5.1e-18 94.0 72 62.5
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 5.1e-18 94.0 72 62.5
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 5.1e-18 94.0 72 62.5
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 6.7e-18 93.6 72 61.1
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 6.7e-18 93.6 72 59.7
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 8.7e-18 93.2 71 63.4
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 8.7e-18 93.2 72 62.5
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 8.7e-18 93.2 72 62.5
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 1.1e-17 92.8 71 60.6
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.1e-17 92.8 72 59.7
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.1e-17 92.8 72 59.7
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 1.5e-17 92.4 71 63.4
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 1.5e-17 92.4 72 59.7
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.5e-17 92.4 72 61.1
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 62.5
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 62.5
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 62.5
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 58.3
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 58.3
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 59.7
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.9e-17 92.0 72 59.7
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.5e-17 91.7 72 59.7
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.5e-17 91.7 72 59.7
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 2.5e-17 91.7 72 61.1
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 2.5e-17 91.7 72 59.7
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 3.3e-17 91.3 72 59.7
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 3.3e-17 91.3 72 58.3
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 3.3e-17 91.3 72 61.1
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 3.3e-17 91.3 72 62.5
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.3e-17 91.3 72 59.7
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.3e-17 90.9 72 61.1
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 4.3e-17 90.9 72 58.3
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 4.3e-17 90.9 72 62.5
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.3e-17 90.9 72 58.3
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.3e-17 90.9 72 58.3
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 5.7e-17 90.5 72 59.7
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.7e-17 90.5 72 58.3
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 5.7e-17 90.5 72 61.1
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 7.4e-17 90.1 71 60.6
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.4e-17 90.1 72 59.7
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.4e-17 90.1 72 59.7
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 7.4e-17 90.1 72 59.7
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 7.4e-17 90.1 71 62.0
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 9.7e-17 89.7 72 58.3
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 9.7e-17 89.7 72 59.7
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 9.7e-17 89.7 71 62.0
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 9.7e-17 89.7 71 62.0
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.3e-16 89.4 72 62.5
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 1.6e-16 89.0 71 63.4
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.6e-16 89.0 72 59.7
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.6e-16 89.0 72 59.7
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.6e-16 89.0 72 58.3
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.6e-16 89.0 72 59.7
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 1.6e-16 89.0 71 62.0
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.2e-16 88.6 72 58.3
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.2e-16 88.6 72 58.3
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 2.8e-16 88.2 72 58.3
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 2.8e-16 88.2 72 59.7
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 2.8e-16 88.2 72 56.9
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 2.8e-16 88.2 72 59.7
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 3.7e-16 87.8 71 62.0
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 3.7e-16 87.8 69 60.9
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 3.7e-16 87.8 69 60.9
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 3.7e-16 87.8 71 62.0
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 3.7e-16 87.8 71 62.0
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.7e-16 87.8 72 58.3
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 3.7e-16 87.8 72 55.6
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 4.8e-16 87.4 72 55.6
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 4.8e-16 87.4 72 58.3
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 4.8e-16 87.4 72 59.7
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 4.8e-16 87.4 72 59.7
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 6.3e-16 87.0 72 56.9
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.3e-16 87.0 72 56.9
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 6.3e-16 87.0 72 58.3
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 6.3e-16 87.0 71 59.2
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 6.3e-16 87.0 71 59.2
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 8.2e-16 86.7 72 56.9
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 8.2e-16 86.7 72 58.3
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 8.2e-16 86.7 72 59.7
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 8.2e-16 86.7 72 56.9
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.1e-15 86.3 72 56.9
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 1.1e-15 86.3 71 54.9
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.1e-15 86.3 72 58.3
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 1.1e-15 86.3 72 59.7
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.1e-15 86.3 72 55.6
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 1.4e-15 85.9 72 56.9
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 1.4e-15 85.9 72 56.9
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 1.4e-15 85.9 72 56.9
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.4e-15 85.9 72 58.3
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 1.4e-15 85.9 72 55.6
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.4e-15 85.9 72 61.1
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.8e-15 85.5 69 58.0
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 1.8e-15 85.5 72 55.6
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.8e-15 85.5 72 61.1
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 2.4e-15 85.1 72 52.8
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.4e-15 85.1 72 54.2
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 2.4e-15 85.1 72 55.6
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 2.4e-15 85.1 72 56.9
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.1e-15 84.7 72 56.9
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 3.1e-15 84.7 72 56.9
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 3.1e-15 84.7 71 57.7
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 3.1e-15 84.7 72 54.2
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 4.1e-15 84.3 72 55.6
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 4.1e-15 84.3 69 56.5
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 4.1e-15 84.3 72 55.6
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 4.1e-15 84.3 72 56.9
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 4.1e-15 84.3 72 55.6
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 5.3e-15 84.0 72 56.9
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 5.3e-15 84.0 68 58.8
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 6.9e-15 83.6 72 56.9
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 6.9e-15 83.6 72 56.9
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 6.9e-15 83.6 72 56.9
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 6.9e-15 83.6 69 58.0
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 6.9e-15 83.6 71 60.6
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 9.0e-15 83.2 72 55.6
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 9.0e-15 83.2 72 56.9
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 1.2e-14 82.8 72 52.8
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.2e-14 82.8 72 55.6
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 2.6e-14 81.6 72 55.6
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 2.6e-14 81.6 71 54.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 3.4e-14 81.3 71 57.7
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 4.5e-14 80.9 72 52.8
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 4.5e-14 80.9 72 50.0
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 5.9e-14 80.5 72 55.6
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 5.9e-14 80.5 72 55.6
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.9e-14 80.5 71 54.9
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 1.0e-13 79.7 72 51.4
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.0e-13 79.7 72 54.2
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 1.3e-13 79.3 72 54.2
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 1.7e-13 79.0 72 54.2
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 2.2e-13 78.6 60 61.7
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 2.9e-13 78.2 69 53.6
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 5.0e-13 77.4 72 55.6
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.5e-13 77.0 62 59.7
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 2.5e-12 75.1 69 53.6
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 4.2e-12 74.3 71 47.9
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 5.5e-12 73.9 71 47.9
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 9.4e-12 73.2 60 56.7
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.2e-11 72.8 72 50.0
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 3.6e-11 71.2 60 58.3
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 1.4e-10 69.3 61 55.7
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 1.8e-10 68.9 60 56.7
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 1.8e-10 68.9 61 54.1
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.3e-10 68.6 72 47.2
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 3.3e-09 64.7 60 51.7
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 1.3e-08 62.8 66 47.0
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 3.7e-08 61.2 67 43.3
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.8e-07 58.9 52 51.9
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 1.8e-07 58.9 52 51.9
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.8e-07 58.9 57 49.1
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 2.4e-07 58.5 69 40.6


User provided reference genes

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