Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1755.0 851 100.0
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1401.7 849 77.9
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1392.5 852 78.4
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1373.2 850 76.1
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1372.1 851 76.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1370.5 850 76.5
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1367.8 849 75.4
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1364.0 851 76.0
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1351.7 853 75.5
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1343.6 850 75.2
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1342.4 852 74.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1339.3 852 74.8
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1338.9 852 74.9
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1337.0 852 74.8
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1331.6 850 74.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1331.2 850 73.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1330.1 850 74.2
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1325.8 852 75.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1317.8 853 73.2
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1317.0 850 72.9
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1312.7 851 73.4
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1309.3 852 72.8
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1306.6 854 73.1
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1303.5 852 72.1
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1301.2 850 72.4
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1300.8 884 70.6
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1292.3 853 71.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1291.2 809 75.9
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1281.5 880 70.2
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1280.0 844 72.2
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1280.0 825 73.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1277.3 850 70.0
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1273.1 863 70.5
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1273.1 970 64.6
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1263.8 857 71.1
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1263.4 853 70.9
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1262.3 850 69.3
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1260.4 852 69.8
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1258.8 811 73.5
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1256.5 865 69.8
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1248.0 849 68.6
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1247.3 850 68.2
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 851 69.4
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 852 68.2
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1242.3 850 68.5
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1241.9 851 68.9
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 852 68.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 850 68.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1233.4 854 67.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1227.6 851 68.5
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1226.5 856 68.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1224.9 850 68.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1224.9 852 68.8
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1223.8 853 67.9
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1218.8 853 68.0
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 854 67.3
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1216.4 863 68.4
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1216.4 854 67.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1209.1 849 67.5
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1209.1 850 67.6
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1208.0 856 67.2
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1207.2 856 68.3
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 850 67.4
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1196.4 873 65.6
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1195.3 853 66.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 853 66.4
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1189.1 850 67.4
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1188.7 854 67.0
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1187.9 885 64.9
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 852 66.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 871 65.7
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1174.5 836 66.3
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1173.7 855 66.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 856 66.7
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 850 66.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1166.0 857 66.4
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1163.7 849 64.8
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1162.5 856 66.0
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1159.8 765 73.1
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 889 63.6
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1158.3 855 65.3
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 846 65.0
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 858 64.9
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1151.3 851 65.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1135.2 850 65.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1135.2 829 66.2
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1132.9 868 61.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1131.3 856 62.7
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 914 61.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1126.3 850 62.7
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1125.5 856 63.2
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1104.7 751 68.3
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 822 61.8
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1092.4 879 60.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1090.9 836 61.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1085.5 775 65.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 775 65.8
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1081.2 778 65.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1081.2 724 69.9
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 0.0e+00 1078.9 769 64.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 860 62.7
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 716 70.1
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.1e-311 1071.2 774 65.5
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 1.2e-310 1069.7 854 61.5
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.4e-310 1068.1 775 64.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 4.4e-310 1067.8 779 64.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 6.6e-306 1053.9 778 64.4
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 9.5e-305 1050.0 778 64.1
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 2.8e-304 1048.5 851 60.4
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 8.3e-301 1036.9 807 62.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 3.2e-300 1035.0 779 63.3
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 3.5e-299 1031.6 781 62.9
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.7e-293 1011.5 780 62.7
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.9e-289 999.2 729 65.2
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 3.3e-289 998.4 818 57.9
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.1e-276 956.8 860 56.6
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.4e-268 929.1 804 57.2
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 7.9e-267 924.1 654 67.6
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.7e-261 906.4 598 72.4
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.6e-251 873.2 859 50.5
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.8e-250 869.8 770 55.8
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-246 857.1 796 54.4
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 5.3e-239 831.6 828 49.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.4e-231 806.2 776 50.1
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.3e-231 805.1 625 62.1
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 8.0e-227 791.2 789 49.8
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 5.9e-222 775.0 775 51.7
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.4e-218 763.8 471 75.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 7.7e-214 748.0 662 58.2
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-205 721.1 431 74.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 4.9e-200 702.2 696 48.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.3e-197 693.3 435 72.4
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 3.6e-187 659.4 482 64.3
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.1e-183 647.9 535 58.1
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.1e-182 643.7 667 51.6
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.0e-181 641.3 428 68.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.4e-177 626.3 590 53.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.5e-164 583.6 865 38.2
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.7e-158 563.5 573 53.2
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 6.2e-155 552.4 777 42.2
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 5.5e-143 512.7 435 61.1
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.5e-140 503.8 406 60.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.2e-136 490.7 320 69.1
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.0e-133 480.3 269 82.5
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 7.7e-121 439.1 331 63.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.3e-115 421.8 387 56.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.3e-115 419.5 402 56.0
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 8.8e-109 399.1 403 53.8
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 9.4e-95 352.4 242 68.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.9e-83 313.5 531 35.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 9.2e-82 309.3 817 31.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.9e-74 285.0 202 65.8
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.9e-71 275.0 208 63.5
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 9.9e-60 236.1 166 63.3
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 1.2e-57 229.2 138 76.8
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.6e-52 209.9 101 88.1
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 9.0e-45 186.4 193 51.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 1.5e-44 185.7 108 80.6
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.2e-33 149.4 198 41.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.5e-31 142.5 111 61.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 8.4e-27 126.7 125 52.0
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.1e-25 122.1 86 67.4
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.5e-23 115.2 84 63.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 5.7e-23 114.0 69 75.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.4e-21 108.6 95 58.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.9e-19 101.7 84 56.0
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.1e-18 99.8 81 58.0
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.9e-18 99.0 64 75.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.3e-16 92.8 61 70.5
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.4e-13 82.8 40 85.0
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.1e-13 81.3 39 87.2
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 7.7e-12 77.0 102 41.2
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-11 76.3 101 41.6
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.5e-10 72.0 44 72.7
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 3.2e-10 71.6 58 58.6
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.0e-08 65.1 69 52.2


User provided reference genes

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