Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1936.8 989 100.0
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1316.2 1076 66.3
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1272.3 1077 64.3
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1271.1 1045 65.1
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1270.0 1080 63.4
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1263.8 1068 65.0
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1261.9 1070 64.1
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1260.0 1076 64.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1258.4 1070 64.0
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1256.5 1070 64.2
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1254.6 1167 60.2
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1241.5 1081 62.8
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1238.0 1077 62.3
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1229.5 1039 64.0
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1225.3 1074 62.7
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1198.7 1077 61.7
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1198.0 1102 61.1
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1190.3 1078 60.7
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1177.5 1074 59.8
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1176.8 1085 59.2
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1172.5 1069 60.1
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1144.4 1031 59.8
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1129.4 1115 57.0
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1128.2 1075 57.9
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1119.8 1089 56.9
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1102.4 1092 57.4
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1101.3 1053 56.9
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1097.4 1070 57.2
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1095.5 1074 57.3
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1095.5 1085 56.0
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1094.3 1066 56.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1094.0 1076 56.8
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1088.2 1055 59.0
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1086.2 1051 56.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1075.1 1044 57.6
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 6.8e-312 1074.3 1073 56.7
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 6.8e-312 1073.5 1057 56.5
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 1.4e-311 1073.2 1116 54.7
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 6.7e-310 1067.4 1062 56.8
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 3.4e-306 1055.0 1054 55.6
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 3.4e-306 1055.0 1054 55.6
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 3.4e-306 1055.0 1054 55.6
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 2.2e-305 1052.4 1053 55.7
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.8e-305 1051.6 1051 54.8
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 8.5e-305 1050.4 1047 55.6
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 8.5e-305 1050.4 1024 57.3
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 1.4e-304 1049.7 1083 55.2
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 5.5e-304 1047.7 1050 55.2
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 5.5e-304 1047.7 1050 56.0
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 5.5e-304 1047.7 1066 54.5
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 1.6e-303 1046.2 1062 55.1
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 2.1e-303 1045.8 1050 54.9
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 1.8e-302 1042.7 1054 54.6
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 3.0e-302 1042.0 1054 55.3
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 1.9e-301 1039.3 1066 55.3
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 4.3e-301 1038.1 1060 55.0
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 9.7e-301 1036.9 1032 55.2
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 4.8e-300 1034.6 1065 55.7
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 8.2e-300 1033.9 1054 55.0
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 1.1e-299 1033.5 1152 51.9
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.8e-299 1032.7 1058 54.7
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 3.1e-299 1031.9 1068 53.3
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 6.9e-299 1030.8 1054 55.1
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 3.4e-298 1028.5 1063 53.7
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 1.7e-297 1026.2 1070 55.0
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 5.0e-297 1024.6 1054 53.9
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.1e-296 1023.5 1096 53.3
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 7.2e-296 1020.8 1056 54.5
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.1e-295 1019.2 1096 54.0
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.1e-293 1013.4 1070 53.3
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 2.0e-293 1012.7 1052 53.6
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 7.4e-293 1010.7 1120 51.5
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.8e-292 1008.8 1098 52.5
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 3.7e-292 1008.4 1050 54.5
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.3e-292 1007.7 1096 52.6
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 2.4e-291 1005.7 1129 53.2
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 3.1e-291 1005.4 1030 55.0
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 2.6e-290 1002.3 1073 51.8
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 5.0e-289 998.0 1133 51.6
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 2.5e-288 995.7 1030 54.0
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 9.4e-288 993.8 1085 51.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 7.9e-287 990.7 1050 53.5
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 2.3e-286 989.2 1046 53.5
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 6.3e-284 981.1 1080 53.7
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 2.4e-283 979.2 1083 52.4
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 3.8e-281 971.8 1081 53.6
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 8.2e-276 954.1 1059 51.8
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 2.1e-263 912.9 1019 51.6
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 1.1e-256 890.6 1005 49.9
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 8.3e-252 874.4 914 55.7
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.8e-251 873.2 1047 48.8
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 9.2e-251 870.9 1021 49.6
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 9.5e-248 860.9 1049 49.3
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 5.2e-246 855.1 966 50.9
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.6e-239 833.6 1060 47.4
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 5.2e-222 775.4 842 53.1
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 2.6e-221 773.1 730 58.2
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 3.7e-207 726.1 687 58.7
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.6e-194 682.6 731 55.3
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 1.6e-191 674.1 640 59.4
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.7e-178 629.4 751 49.0
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-173 614.4 481 64.9
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 3.0e-169 600.1 633 55.8
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 1.2e-149 535.0 356 74.7
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.4e-144 516.9 532 49.8
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 8.3e-143 512.3 1161 32.9
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 6.1e-138 496.1 386 65.3
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 5.8e-136 489.6 357 66.4
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.0e-132 478.8 548 52.6
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 2.5e-131 474.2 928 33.5
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 1.2e-128 465.3 386 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 2.2e-127 461.1 1146 30.8
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 2.1e-117 427.9 636 45.6
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 3.5e-117 427.2 478 51.0
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 8.6e-116 422.5 1003 31.1
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.1e-113 414.1 417 49.6
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 2.0e-104 384.8 326 62.0
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 5.4e-94 350.1 348 52.0
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.2e-80 305.8 326 47.2
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 1.2e-77 295.8 226 68.1
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.2e-72 279.3 209 65.6
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.4e-68 265.8 352 43.5
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.7e-60 236.9 308 44.2
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 7.0e-49 200.3 221 51.1
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.2e-48 199.5 297 41.4
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.8e-41 175.6 120 70.8
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 3.5e-40 171.4 150 64.0
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.5e-35 156.0 199 49.2
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 1.0e-31 143.3 540 25.7
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 1.0e-31 143.3 374 28.9
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 4.9e-26 124.4 203 41.9
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 3.9e-23 114.8 86 65.1
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.0e-20 104.8 166 39.8
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.0e-15 87.8 115 41.7
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.9e-14 85.9 415 24.3
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 5.2e-12 77.8 70 57.1
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.0e-08 64.3 53 64.2
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.3e-07 63.2 271 23.6
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.5e-06 59.7 45 64.4
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 4.3e-06 58.2 98 37.8


User provided reference genes

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