Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 0.0e+00 1085.5 641 100.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 3.2e-172 609.4 442 71.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 8.5e-165 584.7 519 59.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 9.4e-164 581.3 520 59.8
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.8e-159 567.0 514 58.8
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 7.7e-158 561.6 520 58.1
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.7e-158 561.6 533 57.2
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.7e-157 560.5 520 58.1
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.5e-157 558.5 520 58.5
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 6.8e-154 548.5 526 56.8
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.2e-153 547.7 517 57.1
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 2.0e-153 547.0 567 54.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 3.4e-153 546.2 520 57.3
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.3e-152 544.3 525 57.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-152 543.1 528 56.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-152 543.1 528 56.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.1e-151 541.2 533 56.5
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.2e-150 537.7 525 55.4
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.5e-145 518.5 517 55.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.7e-144 516.2 527 54.3
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.1e-143 514.6 514 56.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.1e-143 513.1 529 54.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.2e-142 511.1 518 54.8
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.7e-142 510.0 520 56.2
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 7.8e-142 508.4 527 52.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 8.6e-141 505.0 524 54.0
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.9e-140 503.8 522 55.2
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.9e-140 503.8 548 52.0
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.4e-138 497.7 489 56.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.1e-138 496.5 466 56.4
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.9e-136 490.0 579 48.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.9e-135 487.3 494 53.4
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 3.5e-134 483.0 528 50.8
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.3e-133 481.1 518 53.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.6e-133 478.8 449 57.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 8.6e-133 478.4 524 51.0
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 8.6e-133 478.4 521 52.0
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.9e-132 477.2 524 50.8
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 4.0e-130 469.5 508 50.4
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.2e-130 469.2 529 49.0
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.6e-129 466.8 523 49.5
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 2.6e-129 466.8 524 51.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 4.4e-129 466.1 561 49.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 9.8e-129 464.9 540 50.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 9.8e-129 464.9 549 47.9
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.7e-128 464.2 496 52.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 6.4e-128 462.2 526 49.8
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.1e-127 461.5 510 50.0
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.9e-127 460.7 494 50.8
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.3e-125 454.5 532 51.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.3e-125 453.8 512 48.4
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.0e-125 453.4 555 48.3
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.9e-125 453.0 503 50.1
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 6.6e-125 452.2 526 48.3
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 8.6e-125 451.8 524 48.9
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.6e-125 451.8 528 47.9
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-124 451.1 513 49.5
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.5e-124 450.3 455 52.5
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.6e-123 447.6 515 51.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 8.1e-123 445.3 523 49.1
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.4e-122 444.5 532 47.6
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.4e-122 444.5 516 48.4
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-122 444.5 460 54.6
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.2e-122 442.6 517 47.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 6.8e-122 442.2 515 46.8
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 8.9e-122 441.8 528 47.9
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.2e-121 441.4 540 47.0
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.0e-121 440.7 502 49.4
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.4e-121 439.5 563 45.1
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.9e-121 438.3 574 46.0
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 9.2e-119 431.8 526 48.3
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-118 431.0 529 51.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 4.6e-118 429.5 446 51.6
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 5.1e-117 426.0 516 46.7
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-116 424.5 516 47.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 9.5e-116 421.8 496 48.0
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 8.1e-115 418.7 437 51.7
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.4e-114 417.9 506 47.8
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 5.2e-114 416.0 504 47.0
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.6e-113 413.7 516 45.9
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 4.4e-113 412.9 555 45.4
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.6e-113 412.1 528 47.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.5e-110 403.3 561 43.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.6e-110 402.9 563 41.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 3.0e-109 400.2 525 43.8
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.1e-108 398.3 493 45.2
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.1e-107 394.0 527 44.2
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.8e-107 393.7 522 43.7
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.8e-107 393.7 522 43.7
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 8.1e-107 392.1 522 43.7
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-106 391.3 522 44.3
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.8e-106 391.0 528 42.4
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.8e-106 391.0 497 44.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-106 391.0 527 43.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 4.4e-105 386.3 482 46.1
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.5e-102 376.7 298 61.4
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 5.1e-101 372.9 515 42.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.6e-100 369.4 529 42.0
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.6e-99 367.9 400 53.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.8e-97 359.4 450 47.6
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.4e-95 354.8 480 41.9
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.7e-94 350.5 531 41.6
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 6.0e-94 349.4 515 40.4
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 4.5e-89 333.2 351 54.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 5.8e-89 332.8 521 39.7
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 5.8e-89 332.8 534 40.3
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.6e-86 323.2 349 53.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 7.9e-86 322.4 520 37.9
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.9e-84 317.8 519 37.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.2e-80 304.3 241 59.8
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.9e-80 303.1 323 54.2
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.1e-70 269.6 536 35.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-68 265.4 381 47.0
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.4e-63 245.7 380 42.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.6e-62 243.8 177 64.4
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.5e-60 238.4 171 64.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.6e-57 227.6 355 40.3
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.2e-56 224.6 319 47.6
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.7e-54 216.9 237 47.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 3.8e-48 197.2 365 39.7
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.1e-46 191.4 327 39.4
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.0e-45 187.2 148 62.2
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 5.2e-45 186.8 256 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.9e-40 171.0 295 36.6
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.9e-40 171.0 281 35.9
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.9e-39 168.3 291 34.4
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 6.8e-37 159.8 227 39.2
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-33 148.7 271 35.1
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.3e-32 145.6 213 39.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.5e-31 139.4 87 66.7
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.5e-31 139.4 87 66.7
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.2e-30 139.0 129 51.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.4e-28 131.0 136 50.7
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.9e-24 117.9 99 62.6
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 2.5e-23 114.8 296 28.0
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-19 101.7 257 28.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 3.2e-18 97.8 273 28.9
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.0e-18 96.7 146 45.9
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.3e-16 92.4 263 28.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.3e-16 92.4 263 28.1
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 5.0e-16 90.5 266 28.6
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 5.0e-16 90.5 266 28.6
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 5.0e-16 90.5 266 28.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.2e-09 69.3 55 56.4
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.7e-06 57.4 82 42.7


User provided reference genes

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