Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G089100 Manihot esculenta HOM05D007676 ORTHO05D009456 1.6e-64 249.2 120 100.0
AT4G28395 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 1.2e-16 90.1 126 38.9
TWI23G0504 Tripterygium wilfordii HOM05D007676 ORTHO05D009456 1.2e-16 90.1 92 43.5
QL04p080567 Quercus lobata HOM05D007676 ORTHO05D009456 2.1e-16 89.4 121 38.8
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 2.1e-16 89.4 117 35.9
CARHR236150 Cardamine hirsuta HOM05D007676 ORTHO05D009456 2.7e-16 89.0 121 36.4
THA.LOC104804054 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 3.6e-16 88.6 123 36.6
Sp7g26360 Schrenkiella parvula HOM05D007676 ORTHO05D009456 4.7e-16 88.2 125 38.4
AL7G24190 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 6.1e-16 87.8 122 35.2
Potri.017G013200 Populus trichocarpa HOM05D007676 ORTHO05D009456 8.0e-16 87.4 118 39.8
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 1.4e-15 86.7 122 36.9
MD17G1235700 Malus domestica HOM05D007676 ORTHO05D009456 1.4e-15 86.7 116 40.5
BolC7t46093H Brassica oleracea HOM05D007676 ORTHO05D009456 4.0e-15 85.1 123 35.0
Eucgr.A01836 Eucalyptus grandis HOM05D007676 ORTHO05D009456 1.5e-14 83.2 119 41.2
AT5G44265 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 2.0e-14 82.8 121 37.2
C07p56160 Brassica napus HOM05D000223 ORTHO05D000736 2.0e-14 82.8 123 35.8
Ciclev10018195m.g Citrus clementina HOM05D007676 ORTHO05D009456 2.0e-14 82.8 116 42.2
Carub.0008s0425 Capsella rubella HOM05D007676 ORTHO05D009456 2.6e-14 82.4 120 35.0
Potri.007G138400 Populus trichocarpa HOM05D007676 ORTHO05D009456 2.6e-14 82.4 120 38.3
PGR042G0101 Punica granatum HOM05D007676 ORTHO05D009456 2.6e-14 82.4 119 38.7
Sp2g09080 Schrenkiella parvula HOM05D007676 ORTHO05D009456 2.6e-14 82.4 115 33.9
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 3.4e-14 82.0 121 37.2
Aa31LG2G22250 Aethionema arabicum HOM05D007676 ORTHO05D009456 4.4e-14 81.6 94 38.3
Atru.chr6.2889 Acer truncatum HOM05D007676 ORTHO05D009456 5.7e-14 81.3 113 38.1
Atru.chr6.2952 Acer truncatum HOM05D007676 ORTHO05D009456 5.7e-14 81.3 113 38.1
Thhalv10003292m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 5.7e-14 81.3 123 36.6
Thhalv10026526m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 5.7e-14 81.3 125 36.0
Lalb_Chr14g0367061 Lupinus albus HOM05D007676 ORTHO05D009456 7.5e-14 80.9 117 37.6
A03p58040 Brassica napus HOM05D000223 ORTHO05D000736 9.8e-14 80.5 123 35.0
BraA03t14868Z Brassica rapa HOM05D007676 ORTHO05D009456 9.8e-14 80.5 123 35.0
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 9.8e-14 80.5 117 37.6
Aa31LG7G7240 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.7e-13 79.7 123 35.8
AL8G15740 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 1.7e-13 79.7 117 32.5
CARHR236140 Cardamine hirsuta HOM05D007676 ORTHO05D009456 1.7e-13 79.7 120 36.7
Peaxi162Scf00008g00063 Petunia axillaris HOM05D007676 ORTHO05D009456 1.7e-13 79.7 116 42.2
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 1.7e-13 79.7 121 38.8
THA.LOC104801166 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 1.7e-13 79.7 92 39.1
Phvul.005G103800 Phaseolus vulgaris HOM05D007676 ORTHO05D009456 2.8e-13 79.0 124 37.1
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 3.7e-13 78.6 95 40.0
Ciclev10017923m.g Citrus clementina HOM05D007676 ORTHO05D009456 4.8e-13 78.2 118 33.9
BcaC03g16646 Brassica carinata HOM05D007676 ORTHO05D009456 6.3e-13 77.8 115 33.0
A02p28290 Brassica napus HOM05D007676 ORTHO05D009456 6.3e-13 77.8 115 33.0
C02p44830 Brassica napus HOM05D007676 ORTHO05D009456 6.3e-13 77.8 115 33.0
BolC2t10523H Brassica oleracea HOM05D007676 ORTHO05D009456 6.3e-13 77.8 115 33.0
BraA02t07864Z Brassica rapa HOM05D007676 ORTHO05D009456 6.3e-13 77.8 115 33.0
CARHR178940 Cardamine hirsuta HOM05D007676 ORTHO05D009456 6.3e-13 77.8 117 31.6
Prupe.3G134200 Prunus persica HOM05D007676 ORTHO05D009456 1.1e-12 77.0 123 39.8
FvH4_4g18380 Fragaria vesca HOM05D007676 ORTHO05D009456 3.1e-12 75.5 112 37.5
FAN05G5516 Fragaria x ananassa HOM05D007676 ORTHO05D009456 3.1e-12 75.5 115 40.0
Manes.13G144000 Manihot esculenta HOM05D007676 ORTHO05D009456 3.1e-12 75.5 122 39.3
MD06G1108000 Malus domestica HOM05D007676 ORTHO05D009456 4.1e-12 75.1 114 36.8
Prupe.2G079300 Prunus persica HOM05D007676 ORTHO05D009456 4.1e-12 75.1 118 36.4
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 5.4e-12 74.7 119 34.5
Potri.007G138500 Populus trichocarpa HOM05D007676 ORTHO05D009456 7.0e-12 74.3 117 38.5
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 7.0e-12 74.3 118 34.7
FAN12G2565 Fragaria x ananassa HOM05D007676 ORTHO05D009456 9.1e-12 73.9 110 37.3
VMungo1080G1717 Vigna mungo HOM05D007676 ORTHO05D009456 9.1e-12 73.9 91 40.7
Aa31LG5G2990 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.2e-11 73.6 119 33.6
Aa31LG7G7230 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.2e-11 73.6 126 32.5
Migut.M00162 Erythranthe guttata HOM05D007676 ORTHO05D009456 1.6e-11 73.2 124 33.9
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 2.0e-11 72.8 119 34.5
Gohir.D01G017700 Gossypium hirsutum HOM05D007676 ORTHO05D009456 2.0e-11 72.8 119 33.6
Lalb_Chr14g0366911 Lupinus albus HOM05D007676 ORTHO05D009456 2.0e-11 72.8 116 35.3
Carub.0007s1234 Capsella rubella HOM05D007676 ORTHO05D009456 3.5e-11 72.0 99 36.4
Peaxi162Scf00059g00109 Petunia axillaris HOM05D007676 ORTHO05D009456 4.5e-11 71.6 117 36.8
Aqoxy1G00459 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 5.9e-11 71.2 118 32.2
Glyma.12G204200 Glycine max HOM05D007676 ORTHO05D009456 5.9e-11 71.2 122 35.2
SalBow7G3232 Salvia bowleyana HOM05D007676 ORTHO05D009456 7.7e-11 70.9 117 36.8
SalBow7G3503 Salvia bowleyana HOM05D007676 ORTHO05D009456 7.7e-11 70.9 117 36.8
FvH4_6g26560 Fragaria vesca HOM05D007676 ORTHO05D009456 1.0e-10 70.5 115 38.3
MD06G1108100 Malus domestica HOM05D007676 ORTHO05D009456 1.3e-10 70.1 83 41.0
Aqoxy1G03131 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 2.3e-10 69.3 97 34.0
CAN.G209.28 Capsicum annuum HOM05D007676 ORTHO05D009456 2.9e-10 68.9 114 36.0
MELO3C025219.2 Cucumis melo HOM05D000275 ORTHO05D000181 5.0e-10 68.2 94 35.1
Solyc10g008205.2 Solanum lycopersicum HOM05D007676 ORTHO05D009456 5.0e-10 68.2 110 32.7
TPR.G6389 Trifolium pratense HOM05D007676 ORTHO05D009456 5.0e-10 68.2 98 33.7
Duzib151G0969 Durio zibethinus HOM05D000275 ORTHO05D000181 8.6e-10 67.4 119 34.5
Carub.0005s1796 Capsella rubella HOM05D000275 ORTHO05D000181 1.1e-09 67.0 118 32.2
TAR374G1222 Trochodendron aralioides HOM05D000275 ORTHO05D000181 1.1e-09 67.0 118 35.6
Lj3g0021089 Lotus japonicus HOM05D007676 ORTHO05D009456 1.5e-09 66.6 130 33.1
ClCG04G006370 Citrullus lanatus HOM05D000275 ORTHO05D000181 1.9e-09 66.2 92 38.0
Thhalv10010829m.g Eutrema salsugineum HOM05D000275 ORTHO05D000181 1.9e-09 66.2 118 32.2
Sp5g10670 Schrenkiella parvula HOM05D000275 ORTHO05D000181 1.9e-09 66.2 94 34.0
BcaB01g00502 Brassica carinata HOM05D000275 ORTHO05D000181 2.5e-09 65.9 118 32.2
A03p11930 Brassica napus HOM05D000275 ORTHO05D000181 2.5e-09 65.9 118 33.1
C08p26810 Brassica napus HOM05D000275 ORTHO05D000181 2.5e-09 65.9 118 32.2
BraA03t10505Z Brassica rapa HOM05D000275 ORTHO05D000181 2.5e-09 65.9 118 33.1
Hund19776 Selenicereus undatus HOM05D000275 ORTHO05D000181 2.5e-09 65.9 117 39.3
Aqoxy4G02399 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 3.3e-09 65.5 118 31.4
Manes.01G246800 Manihot esculenta HOM05D000275 ORTHO05D000181 3.3e-09 65.5 118 30.5
BcaB01g00437 Brassica carinata HOM05D000275 ORTHO05D000181 4.2e-09 65.1 118 32.2
Manes.05G054100 Manihot esculenta HOM05D000275 ORTHO05D000181 4.2e-09 65.1 117 32.5
Aqoxy4G00389 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 5.5e-09 64.7 112 28.6
Os12g0114500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 5.5e-09 64.7 119 34.5
CDE07G1651 Ceratophyllum demersum HOM05D000275 ORTHO05D000181 7.2e-09 64.3 117 30.8
Os11g0114900 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 7.2e-09 64.3 117 35.0
Sed0022427 Sechium edule HOM05D000275 ORTHO05D000181 9.5e-09 63.9 121 33.9
FAN23G2239 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.2e-08 63.5 76 38.2
Potri.014G098000 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.2e-08 63.5 117 30.8
AT3G51600 Arabidopsis thaliana HOM05D000275 ORTHO05D000181 1.6e-08 63.2 118 31.4
CSS0044840 Camellia sinensis var. sinensis HOM05D007676 ORTHO05D009456 2.8e-08 62.4 119 35.3
CARHR161190 Cardamine hirsuta HOM05D000275 ORTHO05D000181 2.8e-08 62.4 118 30.5
Manes.05G054050 Manihot esculenta HOM05D000275 ORTHO05D000181 2.8e-08 62.4 110 31.8
Aqoxy4G00381 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 3.6e-08 62.0 114 30.7
Thhalv10017438m.g Eutrema salsugineum HOM05D000275 ORTHO05D000181 3.6e-08 62.0 120 28.3
Os12g0115300 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 3.6e-08 62.0 118 33.9
BcaC06g32625 Brassica carinata HOM05D007676 ORTHO05D009456 4.7e-08 61.6 104 30.8
COL.COLO4_12419 Corchorus olitorius HOM05D000275 ORTHO05D000181 4.7e-08 61.6 92 37.0
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 4.7e-08 61.6 91 31.9
Aqoxy7G00106 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 8.0e-08 60.8 119 32.8
HanXRQChr10g0287581 Helianthus annuus HOM05D000275 ORTHO05D000181 8.0e-08 60.8 116 31.0
arahy.Tifrunner.gnm1.ann1.SH5L4P Arachis hypogaea HOM05D029628 ORTHO05D009456 1.0e-07 60.5 84 38.1
VMungo0331G1741 Vigna mungo HOM05D000275 ORTHO05D000181 1.0e-07 60.5 117 30.8
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.4e-07 60.1 117 29.1
Hund24417 Selenicereus undatus HOM05D000275 ORTHO05D000181 1.4e-07 60.1 94 34.0
Atru.chr9.1983 Acer truncatum HOM05D000275 ORTHO05D000181 1.8e-07 59.7 92 35.9
Atru.chr9.1997 Acer truncatum HOM05D000275 ORTHO05D000181 1.8e-07 59.7 92 35.9
HanXRQChr06g0181021 Helianthus annuus HOM05D000275 ORTHO05D000181 1.8e-07 59.7 118 34.7
Aqoxy4G00405 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 2.3e-07 59.3 114 26.3
CARHR161180 Cardamine hirsuta HOM05D000275 ORTHO05D000181 2.3e-07 59.3 121 26.4
Aqoxy4G00377 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 3.0e-07 58.9 121 32.2
arahy.Tifrunner.gnm1.ann1.0QPA7A Arachis hypogaea HOM05D029628 ORTHO05D009456 3.0e-07 58.9 84 38.1
arahy.Tifrunner.gnm1.ann1.W0QD2B Arachis hypogaea HOM05D029628 ORTHO05D009456 3.0e-07 58.9 84 38.1
Hund24418 Selenicereus undatus HOM05D000275 ORTHO05D000181 3.0e-07 58.9 117 31.6
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 4.0e-07 58.5 124 32.3
Ah.08g209510 Amaranthus hybridus HOM05D000275 ORTHO05D000181 4.0e-07 58.5 107 29.0
Aqoxy4G00380 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 4.0e-07 58.5 121 32.2
COL.COLO4_26881 Corchorus olitorius HOM05D000275 ORTHO05D010802 4.0e-07 58.5 95 29.5
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 4.0e-07 58.5 91 30.8
COL.COLO4_26882 Corchorus olitorius HOM05D000275 ORTHO05D010802 5.2e-07 58.2 90 30.0
Hma1.2p1_0295F.1_g116650 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 5.2e-07 58.2 118 31.4
Sp6g21000 Schrenkiella parvula HOM05D000275 ORTHO05D000181 5.2e-07 58.2 95 32.6
Thecc.06G008800 Theobroma cacao HOM05D000275 ORTHO05D010802 5.2e-07 58.2 103 26.2
PSO063G5480 Papaver somniferum HOM05D000275 ORTHO05D000181 6.8e-07 57.8 119 26.9
RcHm_v2.0_Chr1g0347601 Rosa chinensis HOM05D000275 ORTHO05D000181 6.8e-07 57.8 91 29.7
PSO063G4293 Papaver somniferum HOM05D000275 ORTHO05D000181 8.9e-07 57.4 104 29.8
PSO832G2396 Papaver somniferum HOM05D000275 ORTHO05D000181 8.9e-07 57.4 115 26.1
Duzib138G0524 Durio zibethinus HOM05D000275 ORTHO05D000181 1.2e-06 57.0 116 30.2
Gohir.A09G213652 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.2e-06 57.0 122 30.3
Gohir.D09G214600 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.2e-06 57.0 122 30.3
Gorai.006G235000 Gossypium raimondii HOM05D000275 ORTHO05D000181 1.2e-06 57.0 122 30.3
Peaxi162Scf00050g00313 Petunia axillaris HOM05D007676 ORTHO05D009456 1.2e-06 57.0 85 35.3
Psat0s13238g0040 Pisum sativum HOM05D000275 ORTHO05D003378 1.2e-06 57.0 118 30.5
Hund03716 Selenicereus undatus HOM05D000275 ORTHO05D000181 1.2e-06 57.0 115 33.0
Lj3g0015733 Lotus japonicus HOM05D000275 ORTHO05D000181 1.5e-06 56.6 123 26.0
Manes.02G010200 Manihot esculenta HOM05D000275 ORTHO05D000181 1.5e-06 56.6 118 27.1
Ca_26537_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 2.0e-06 56.2 123 27.6
MELO3C009108.2 Cucumis melo HOM05D000275 ORTHO05D000181 2.0e-06 56.2 99 31.3
Lalb_Chr07g0190421 Lupinus albus HOM05D000275 ORTHO05D000181 2.0e-06 56.2 124 27.4
Potri.002G012300 Populus trichocarpa HOM05D007676 ORTHO05D009456 2.0e-06 56.2 114 32.5
Actinidia36015 Actinidia chinensis HOM05D000275 ORTHO05D000181 2.6e-06 55.8 117 33.3
Hund28933 Selenicereus undatus HOM05D000275 ORTHO05D000181 2.6e-06 55.8 111 32.4
TWI32G0556 Tripterygium wilfordii HOM05D000275 ORTHO05D010802 2.6e-06 55.8 111 25.2
Ciclev10033516m.g Citrus clementina HOM05D000275 ORTHO05D000181 3.4e-06 55.5 114 29.8
COL.COLO4_23152 Corchorus olitorius HOM05D000275 ORTHO05D000181 3.4e-06 55.5 109 29.4
Sabra14G0071800 Salix brachista HOM05D009669 ORTHO05D000181 3.4e-06 55.5 117 29.9
Sp4g20870 Schrenkiella parvula HOM05D000275 ORTHO05D000181 3.4e-06 55.5 120 28.3
AT2G38540 Arabidopsis thaliana HOM05D000275 ORTHO05D000181 4.4e-06 55.1 119 28.6
BcaB05g21971 Brassica carinata HOM05D000275 ORTHO05D000181 4.4e-06 55.1 114 30.7
Medtr4g028250 Medicago truncatula HOM05D000275 ORTHO05D000181 4.4e-06 55.1 116 31.0
PSO017G4514 Papaver somniferum HOM05D000275 ORTHO05D000181 4.4e-06 55.1 118 28.8
PSO478G0326 Papaver somniferum HOM05D000275 ORTHO05D000181 4.4e-06 55.1 107 29.0
Psat0s1251g0040 Pisum sativum HOM05D000275 ORTHO05D000181 4.4e-06 55.1 115 30.4
Psat3g119560 Pisum sativum HOM05D000275 ORTHO05D000181 4.4e-06 55.1 115 30.4
PGSC0003DMG400032819 Solanum tuberosum HOM05D007676 ORTHO05D009456 4.4e-06 55.1 118 30.5
AL4G35820 Arabidopsis lyrata HOM05D000275 ORTHO05D000181 5.7e-06 54.7 118 28.0
Medtr4g028180 Medicago truncatula HOM05D000275 ORTHO05D000181 5.7e-06 54.7 123 27.6
PSO478G3364 Papaver somniferum HOM05D000275 ORTHO05D000181 5.7e-06 54.7 121 28.1
Sabra02G0009600 Salix brachista HOM05D007676 ORTHO05D009456 5.7e-06 54.7 114 32.5
A03p11770 Brassica napus HOM05D000275 ORTHO05D000181 7.5e-06 54.3 95 32.6
FAN03G2574 Fragaria x ananassa HOM05D000275 ORTHO05D000181 7.5e-06 54.3 91 29.7
TWI23G1017 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 7.5e-06 54.3 117 29.1
Carub.0004s2052 Capsella rubella HOM05D000275 ORTHO05D000181 9.8e-06 53.9 118 27.1
Migut.H00916 Erythranthe guttata HOM05D000275 ORTHO05D000181 9.8e-06 53.9 114 28.9
Os02g0445300 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 9.8e-06 53.9 82 39.0
QL07p032271 Quercus lobata HOM05D000275 ORTHO05D000181 9.8e-06 53.9 109 30.3
Sp6g21010 Schrenkiella parvula HOM05D000275 ORTHO05D000181 9.8e-06 53.9 94 30.9
GSVIVG01021772001 Vitis vinifera HOM05D000275 ORTHO05D010802 9.8e-06 53.9 111 27.9


User provided reference genes

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