Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 2.9e-282 974.5 486 100.0
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 6.0e-195 684.5 496 70.2
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 2.5e-193 679.1 494 69.0
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 4.3e-193 678.3 489 69.7
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.5e-190 669.8 495 68.5
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 7.6e-190 667.5 487 70.0
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 2.1e-184 649.4 489 66.5
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 1.4e-183 646.7 488 68.4
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.7e-179 632.5 452 70.4
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 4.6e-179 631.7 495 65.3
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 2.3e-178 629.4 495 65.1
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 1.6e-176 623.2 496 64.3
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 2.1e-176 622.9 558 60.6
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 2.4e-175 619.4 495 64.6
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 4.0e-175 618.6 475 65.5
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 5.3e-175 618.2 495 64.4
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 9.0e-175 617.5 484 67.1
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.2e-174 617.1 456 66.9
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 4.5e-174 615.1 495 64.6
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 5.8e-174 614.8 467 67.2
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 3.8e-173 612.1 493 63.7
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 5.5e-172 608.2 456 66.0
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 2.1e-171 606.3 494 63.2
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 9.6e-169 597.4 494 59.7
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 3.4e-166 589.0 426 69.2
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 1.4e-164 583.6 444 65.1
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 1.9e-164 583.2 494 62.6
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 2.7e-163 579.3 521 59.9
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 3.5e-163 578.9 484 61.8
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 3.5e-163 578.9 453 64.9
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 6.0e-163 578.2 490 61.2
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 1.3e-162 577.0 492 61.8
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 1.8e-162 576.6 459 63.4
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 3.9e-162 575.5 456 62.7
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 6.7e-162 574.7 450 63.6
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 2.5e-161 572.8 466 62.4
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 7.4e-161 571.2 460 63.9
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 9.6e-161 570.9 468 60.9
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 1.6e-160 570.1 413 67.1
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 4.8e-160 568.5 430 65.6
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 1.1e-159 567.4 469 60.3
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 1.4e-159 567.0 424 64.2
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 1.8e-159 566.6 454 61.9
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 2.4e-159 566.2 452 61.9
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 2.4e-159 566.2 424 64.2
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 9.0e-159 564.3 452 61.7
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 9.0e-159 564.3 432 64.6
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 1.5e-158 563.5 460 61.7
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 4.5e-158 562.0 428 65.9
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 1.0e-157 560.8 487 59.5
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 1.0e-157 560.8 481 59.0
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 1.3e-157 560.5 426 64.1
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 2.2e-157 559.7 484 59.9
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 3.8e-157 558.9 495 58.6
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 8.5e-157 557.8 416 66.1
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 1.4e-156 557.0 436 62.6
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 1.9e-156 556.6 466 60.1
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 2.5e-156 556.2 440 62.5
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 3.2e-156 555.8 457 61.5
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 5.5e-156 555.1 458 62.4
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 9.3e-156 554.3 473 60.9
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 1.6e-155 553.5 475 58.9
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 4.6e-155 552.0 433 63.7
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 7.9e-155 551.2 435 63.2
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 1.0e-154 550.8 441 63.9
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.3e-154 550.4 419 63.2
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 9.7e-153 544.3 441 61.0
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.8e-152 542.7 445 60.2
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 1.4e-151 540.4 459 59.9
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.2e-150 537.3 406 63.5
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 1.5e-150 537.0 422 61.8
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 3.4e-150 535.8 447 57.9
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 5.9e-150 535.0 479 58.2
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 2.5e-148 529.6 394 66.2
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 1.2e-147 527.3 471 58.6
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 1.6e-147 526.9 455 57.4
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 3.6e-147 525.8 423 60.0
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 6.1e-147 525.0 371 67.9
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 1.3e-144 517.3 441 61.5
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 1.7e-144 516.9 484 56.8
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 1.4e-143 513.8 461 57.9
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 2.4e-143 513.1 431 59.2
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 2.4e-143 513.1 374 65.0
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 2.6e-142 509.6 521 53.2
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 1.0e-141 507.7 407 61.7
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 4.2e-140 502.3 428 58.6
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 3.9e-138 495.7 371 64.4
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 3.3e-137 492.7 417 58.3
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 4.4e-137 492.3 424 58.7
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 5.3e-135 485.3 418 58.1
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 5.0e-133 478.8 443 54.9
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 8.0e-131 471.5 369 62.3
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 2.0e-129 466.8 436 56.9
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 4.1e-127 459.1 384 62.8
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 6.5e-125 451.8 443 53.3
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.4e-114 417.5 430 51.6
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.6e-113 413.3 428 52.3
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 8.9e-106 388.3 283 68.2
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 5.0e-101 372.5 441 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 4.4e-97 359.4 429 43.1
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 3.9e-93 346.3 303 56.4
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 3.4e-89 333.2 453 40.2
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 8.3e-88 328.6 400 43.5
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 1.4e-87 327.8 221 69.7
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 6.0e-86 322.4 380 47.6
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 5.6e-84 315.8 260 64.2
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 6.8e-82 308.9 299 57.9
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 4.0e-74 283.1 246 62.2
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 2.4e-55 220.7 224 54.0
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 4.2e-55 219.9 455 36.3
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 4.9e-48 196.4 470 28.9
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 1.5e-41 174.9 166 56.0
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 1.1e-34 152.1 122 63.1
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 1.4e-34 151.8 142 52.8
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 3.4e-33 147.1 100 68.0
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 4.7e-30 136.7 118 56.8
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 6.7e-29 132.9 93 64.5
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 7.4e-28 129.4 136 58.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 9.7e-28 129.0 416 26.7
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.4e-23 115.2 80 67.5
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 1.6e-17 95.1 92 45.7
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 1.0e-13 82.4 105 45.7
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 1.2e-12 79.0 49 81.6
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 5.7e-12 76.6 69 50.7
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 3.7e-11 73.9 51 62.7
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 2.9e-08 64.3 55 58.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 7.2e-07 59.7 250 25.6


User provided reference genes

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