Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 7.5e-175 617.1 312 100.0
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 1.3e-137 493.4 309 82.5
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 6.9e-136 487.6 319 81.2
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 2.0e-135 486.1 313 79.2
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 2.6e-135 485.7 313 79.2
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 5.8e-135 484.6 312 80.8
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.0e-134 483.8 313 79.6
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 5.5e-133 478.0 312 79.8
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 2.7e-132 475.7 312 78.8
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.0e-131 473.8 312 79.5
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 1.1e-130 470.3 312 77.6
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.9e-130 469.5 312 79.2
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 1.3e-129 466.8 313 76.7
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 1.6e-129 466.5 312 77.9
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 2.1e-129 466.1 307 79.2
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 2.8e-129 465.7 312 76.9
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 1.8e-128 463.0 310 77.1
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 6.9e-128 461.1 315 77.1
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 6.9e-128 461.1 264 87.9
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 8.5e-126 454.1 310 76.5
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 8.5e-126 454.1 311 74.9
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.1e-125 453.8 313 75.1
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.9e-125 453.0 311 74.6
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 2.5e-125 452.6 311 74.9
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 7.2e-125 451.1 313 74.4
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 2.1e-124 449.5 314 74.2
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 2.1e-124 449.5 313 73.8
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 2.7e-124 449.1 303 76.2
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 4.6e-124 448.4 311 73.6
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 4.6e-124 448.4 297 75.1
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 6.1e-124 448.0 305 76.4
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 7.9e-124 447.6 309 73.8
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 1.8e-123 446.4 313 75.1
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 8.7e-123 444.1 272 83.5
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 1.1e-122 443.7 305 75.7
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 1.5e-122 443.4 305 74.8
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 9.7e-122 440.7 306 74.5
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 1.3e-121 440.3 315 74.0
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 1.6e-121 439.9 312 72.4
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.6e-121 439.9 311 73.0
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 1.6e-121 439.9 315 72.7
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 3.7e-121 438.7 267 83.1
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 3.7e-121 438.7 271 80.1
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 4.8e-121 438.3 312 73.4
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 1.1e-120 437.2 308 73.7
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 2.4e-120 436.0 264 82.2
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 4.1e-120 435.3 309 72.2
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 1.2e-119 433.7 302 73.8
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 2.6e-119 432.6 257 83.7
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 2.6e-119 432.6 263 79.8
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 4.5e-119 431.8 257 83.3
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 1.0e-118 430.6 307 72.6
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 2.2e-118 429.5 323 74.3
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 2.9e-118 429.1 266 81.2
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 3.8e-118 428.7 262 82.8
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 5.5e-117 424.9 300 73.0
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 4.6e-116 421.8 310 70.6
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 4.6e-116 421.8 307 72.0
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 4.6e-116 421.8 299 74.2
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 3.9e-115 418.7 311 70.7
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 3.9e-115 418.7 348 65.8
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 3.3e-114 415.6 276 75.7
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 3.7e-113 412.1 289 72.3
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 4.8e-113 411.8 266 77.1
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 8.2e-113 411.0 298 70.5
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 1.8e-112 409.8 245 84.1
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 1.8e-112 409.8 265 77.4
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.5e-111 406.8 240 85.4
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 5.9e-111 404.8 286 72.0
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 1.3e-110 403.7 257 78.6
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 8.5e-110 401.0 283 72.4
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 1.4e-109 400.2 311 69.1
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 9.4e-109 397.5 307 69.1
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 9.4e-109 397.5 311 67.5
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 1.8e-107 393.3 311 66.9
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 2.3e-107 392.9 290 70.3
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 3.0e-107 392.5 311 67.8
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 3.0e-107 392.5 311 67.8
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 5.2e-107 391.7 304 67.4
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 2.0e-106 389.8 311 67.2
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 2.0e-106 389.8 315 69.8
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 4.4e-106 388.7 310 66.8
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 5.7e-106 388.3 311 66.9
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 2.8e-105 386.0 310 65.8
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 2.8e-105 386.0 310 65.8
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 2.8e-105 386.0 234 84.2
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 1.1e-104 384.0 311 66.6
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 1.8e-104 383.3 311 66.6
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 3.1e-104 382.5 304 66.4
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 4.1e-104 382.1 304 65.5
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 8.0e-100 367.9 254 78.7
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 1.4e-99 367.1 267 73.4
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 8.8e-99 364.4 248 71.0
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.6e-98 362.8 219 84.0
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 1.2e-95 354.0 311 63.7
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 1.6e-95 353.6 227 78.0
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 2.7e-95 352.8 344 60.5
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 3.5e-95 352.4 254 74.4
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 3.5e-95 352.4 269 64.3
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 5.9e-95 351.7 253 73.9
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 1.0e-91 340.9 243 74.5
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 5.7e-90 335.1 246 74.0
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 8.3e-89 331.3 247 67.2
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.2e-87 327.4 253 64.4
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 8.5e-86 321.2 221 76.0
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 1.1e-85 320.9 312 57.4
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 5.5e-85 318.5 244 64.3
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 1.6e-79 300.4 178 84.3
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 5.9e-79 298.5 311 55.9
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 5.4e-72 275.4 177 80.8
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 5.9e-71 271.9 243 57.2
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 3.0e-70 269.6 250 58.8
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 2.1e-55 220.3 130 85.4
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 2.7e-55 219.9 288 45.8
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 4.6e-47 192.6 116 76.7
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 1.1e-40 171.4 122 67.2
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 2.7e-39 166.8 112 71.4
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 1.1e-35 154.8 95 77.9
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.3e-33 147.9 90 80.0
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 6.7e-30 135.6 78 84.6
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 9.0e-27 125.2 90 65.6
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 1.6e-12 77.8 64 64.1
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 5.3e-11 72.8 44 75.0
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 5.0e-09 66.2 46 69.6
Nn7g37440 Nelumbo nucifera HOM05D006330 ORTHO05D008013 1.6e-07 61.2 41 70.7


User provided reference genes

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