Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 2196.8 1128 100.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1672.9 1136 77.0
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1664.0 1138 77.2
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1662.1 1138 77.3
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1643.6 1135 76.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1642.9 1142 76.3
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1638.6 1139 75.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1608.6 1145 73.9
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1604.7 1141 74.7
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1599.3 1132 74.6
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1590.1 1139 73.7
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1584.7 1130 74.8
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1578.9 1138 73.4
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1578.9 1136 73.2
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1577.8 1137 73.4
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1577.4 1139 73.6
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1577.4 1138 74.3
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1576.6 1143 73.1
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1576.2 1138 72.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1573.5 1131 74.0
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1570.4 1142 72.9
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1552.3 1137 72.1
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1547.7 1133 71.6
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1545.4 1141 71.3
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1540.4 1137 70.5
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1539.2 1136 71.8
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1538.9 1139 72.2
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1538.1 1134 71.5
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1530.4 1148 71.1
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1526.5 1137 70.6
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1524.2 1133 71.8
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1519.2 1138 70.9
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1515.4 1162 70.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1515.4 1139 70.0
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1513.8 1139 71.3
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1506.1 1139 69.7
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1130 69.5
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1493.0 1130 69.5
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1493.0 1130 69.4
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1488.0 1153 68.4
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1486.1 1139 68.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1482.6 1140 69.7
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1481.5 1138 70.4
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1479.5 1130 70.5
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1476.1 1139 68.9
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1468.8 1139 69.4
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1464.9 1143 68.4
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1457.6 1145 68.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1456.4 1141 68.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1449.5 1143 67.7
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1445.6 1142 67.3
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1413.7 1144 65.7
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1407.9 1143 66.9
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1407.9 1091 70.4
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1406.0 1090 68.0
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1405.6 1142 66.5
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1403.7 1089 68.8
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1401.7 1092 67.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1396.3 1144 66.1
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1395.9 1150 65.7
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1394.4 1141 66.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1393.6 1145 66.4
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1390.2 1187 64.0
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1389.4 1145 65.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1382.9 1140 66.5
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1378.6 1151 65.5
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1377.1 1131 66.3
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1372.5 1163 64.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1365.5 1090 66.5
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1358.2 1094 66.2
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1357.8 1095 66.4
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1356.7 1148 63.8
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1353.6 1120 65.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1345.5 1094 66.0
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1334.3 1115 63.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1333.5 1116 64.1
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1330.1 1094 64.8
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1326.2 1096 64.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1319.3 1095 64.6
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1317.8 1088 64.6
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1317.0 1086 65.2
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1291.9 1122 62.3
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1290.0 1015 69.0
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1288.9 1084 63.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1256.5 943 70.4
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1248.4 943 70.1
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1248.4 1293 56.0
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1245.0 1091 62.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1221.5 1019 66.3
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1203.3 948 66.5
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1182.9 1111 59.5
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1178.7 1367 52.7
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1176.4 1096 58.3
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1173.3 1110 58.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1168.7 1108 59.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1159.8 967 65.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1141.3 1076 59.9
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1139.0 1132 57.4
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 8.4e-309 1063.9 1018 60.0
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.2e-299 1033.5 929 62.1
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.8e-288 995.7 1048 55.5
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 5.0e-285 984.9 885 63.3
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.0e-250 870.9 800 62.0
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.7e-240 835.9 1129 43.8
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.9e-236 823.5 702 61.8
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.7e-235 818.9 908 54.3
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 6.8e-234 815.1 987 51.8
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 8.9e-234 814.7 1114 43.1
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.3e-232 808.1 1122 43.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.9e-231 807.0 1142 41.6
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.6e-230 802.4 1101 42.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 7.8e-230 801.6 900 53.7
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.2e-223 779.6 805 57.3
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 2.3e-213 746.9 646 64.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 2.9e-208 729.9 639 62.3
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.3e-205 720.3 521 69.9
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 4.6e-198 696.0 1062 39.0
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.1e-186 656.4 435 78.2
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.5e-185 654.4 421 79.8
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 5.9e-185 652.5 521 65.5
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.1e-164 585.1 520 60.6
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 5.0e-144 516.5 494 60.1
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.6e-134 485.0 406 65.8
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.0e-121 441.4 336 67.9
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.6e-113 415.2 626 42.5
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.8e-107 394.0 228 82.9
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 6.4e-107 393.3 357 59.7
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 3.3e-103 380.9 819 33.3
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 9.9e-92 342.8 355 52.7
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.4e-91 340.1 186 85.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.1e-88 330.5 359 53.2
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.7e-86 324.3 580 38.8
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.4e-85 321.6 230 75.7
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 1.3e-70 272.7 1097 24.9
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-70 271.9 190 73.7
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.7e-67 262.3 141 89.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.9e-67 261.5 198 64.1
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 6.1e-65 253.8 141 87.9
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-63 249.6 244 55.3
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.5e-63 249.2 145 82.8
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.8e-62 244.2 1281 22.0
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.4e-61 241.9 257 52.9
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.3e-54 217.2 554 33.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 2.4e-53 215.3 134 85.1
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.9e-53 213.8 169 71.6
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.9e-53 213.8 169 71.6
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 2.6e-52 211.8 118 86.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.3e-51 209.5 116 85.3
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.8e-51 208.0 116 87.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.5e-44 184.9 140 71.4
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.7e-43 182.6 134 73.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.9e-42 179.1 145 64.1
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 6.1e-41 174.1 132 72.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.5e-39 169.5 192 53.1
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 4.1e-37 161.4 135 64.4
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.6e-36 159.5 82 90.2
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 3.8e-35 154.8 83 86.7
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 8.5e-35 153.7 83 86.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.1e-34 153.3 134 60.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 4.7e-33 147.9 1166 20.3
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.2e-32 144.4 112 68.8
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.1e-29 135.2 153 48.4
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 7.0e-29 134.0 117 59.0
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-28 133.3 134 53.0
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.5e-28 131.7 167 50.3
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 8.6e-27 127.1 115 60.0
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.9e-26 125.9 88 79.5
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 2.1e-25 122.5 110 63.6
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 9.8e-23 113.6 85 67.1
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.0e-19 103.6 95 58.9
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.0e-19 103.6 111 53.2
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 2.3e-19 102.4 87 57.5
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 5.4e-13 81.3 80 60.0
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 1.6e-12 79.7 59 72.9
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.0e-08 65.1 43 69.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.0e-08 65.1 45 66.7


User provided reference genes

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