Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 8.8e-56 220.7 175 100.0
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 7.3e-34 147.9 175 57.7
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.7e-14 83.6 74 59.5
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.7e-14 83.6 74 60.8
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.2e-14 83.2 74 60.8
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 8.4e-14 81.3 72 59.7
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.1e-13 80.9 72 59.7
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 7.1e-13 78.2 79 51.9
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 9.2e-13 77.8 79 50.6
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 9.2e-13 77.8 80 55.0
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 1.2e-12 77.4 71 57.7
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 2.1e-12 76.6 72 59.7
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 2.1e-12 76.6 71 59.2
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.7e-12 76.3 68 55.9
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 4.6e-12 75.5 96 56.2
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 4.6e-12 75.5 78 44.9
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 6.0e-12 75.1 77 54.5
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 6.0e-12 75.1 82 53.7
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 6.0e-12 75.1 71 54.9
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 1.0e-11 74.3 73 54.8
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.3e-11 73.9 73 54.8
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.7e-11 73.6 72 52.8
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 1.7e-11 73.6 68 54.4
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.3e-11 73.2 82 52.4
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 3.0e-11 72.8 78 53.8
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.9e-11 72.4 70 52.9
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 3.9e-11 72.4 67 53.7
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 5.1e-11 72.0 72 52.8
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 5.1e-11 72.0 72 52.8
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 5.1e-11 72.0 72 52.8
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 5.1e-11 72.0 72 52.8
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 6.6e-11 71.6 77 53.2
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.6e-11 71.6 71 52.1
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 6.6e-11 71.6 72 52.8
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 8.6e-11 71.2 78 48.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 8.6e-11 71.2 68 52.9
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.1e-10 70.9 68 47.1
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.5e-10 70.5 69 56.5
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.5e-10 70.5 55 63.6
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.5e-10 70.5 55 63.6
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.9e-10 70.1 69 56.5
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 1.9e-10 70.1 65 53.8
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.9e-10 70.1 72 50.0
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.3e-10 69.3 88 46.6
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 3.3e-10 69.3 62 54.8
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 3.3e-10 69.3 73 53.4
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 3.3e-10 69.3 73 53.4
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 3.3e-10 69.3 78 44.9
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 5.6e-10 68.6 50 66.0
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 5.6e-10 68.6 70 51.4
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 7.3e-10 68.2 66 54.5
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 7.3e-10 68.2 75 48.0
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 9.6e-10 67.8 75 49.3
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 2.1e-09 66.6 74 47.3
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.1e-09 66.6 79 49.4
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.1e-09 66.6 70 47.1
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 2.1e-09 66.6 59 61.0
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 2.8e-09 66.2 74 54.1
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.8e-09 66.2 48 64.6
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.8e-09 66.2 65 55.4
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 2.8e-09 66.2 77 42.9
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.8e-09 66.2 70 54.3
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 3.6e-09 65.9 70 51.4
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 3.6e-09 65.9 69 52.2
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 4.7e-09 65.5 70 52.9
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 4.7e-09 65.5 70 51.4
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 4.7e-09 65.5 50 64.0
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.2e-09 65.1 50 64.0
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 8.1e-09 64.7 76 53.9
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 8.1e-09 64.7 70 52.9
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 8.1e-09 64.7 86 48.8
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.1e-08 64.3 96 41.7
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.1e-08 64.3 59 57.6
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 1.1e-08 64.3 73 54.8
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 1.4e-08 63.9 72 45.8
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.4e-08 63.9 65 52.3
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 1.4e-08 63.9 74 50.0
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.8e-08 63.5 70 47.1
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.8e-08 63.5 59 57.6
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.8e-08 63.5 59 57.6
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 1.8e-08 63.5 67 50.7
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 2.4e-08 63.2 73 42.5
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 2.4e-08 63.2 68 55.9
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 2.4e-08 63.2 74 50.0
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 2.4e-08 63.2 74 50.0
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.4e-08 63.2 73 52.1
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 3.1e-08 62.8 46 65.2
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 3.1e-08 62.8 78 46.2
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 3.1e-08 62.8 70 51.4
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 4.0e-08 62.4 60 55.0
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 6.8e-08 61.6 69 46.4
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 8.9e-08 61.2 65 44.6
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 8.9e-08 61.2 50 60.0
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 8.9e-08 61.2 58 53.4
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 8.9e-08 61.2 82 45.1
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 8.9e-08 61.2 70 45.7
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 1.2e-07 60.8 62 46.8
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.2e-07 60.8 77 42.9
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.5e-07 60.5 82 45.1
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.5e-07 60.5 72 47.2
Nn2g13093 Nelumbo nucifera HOM05D004188 ORTHO05D004445 1.5e-07 60.5 82 47.6
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 2.0e-07 60.1 61 55.7
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 2.6e-07 59.7 55 50.9
C04p22940 Brassica napus HOM05D011190 ORTHO05D013686 3.4e-07 59.3 72 45.8
BolC4t23788H Brassica oleracea HOM05D011190 ORTHO05D013686 3.4e-07 59.3 72 45.8
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 3.4e-07 59.3 74 48.6
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 4.4e-07 58.9 74 50.0
Mapoly0127s0007 Marchantia polymorpha HOM05D004188 ORTHO05D004445 4.4e-07 58.9 51 54.9
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.8e-07 58.5 74 50.0
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 7.6e-07 58.2 70 47.1
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 7.6e-07 58.2 79 41.8
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 9.9e-07 57.8 61 49.2
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 9.9e-07 57.8 66 47.0
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 9.9e-07 57.8 50 58.0
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 9.9e-07 57.8 70 44.3
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 9.9e-07 57.8 59 47.5
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 1.3e-06 57.4 66 45.5
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 1.3e-06 57.4 66 51.5
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 1.3e-06 57.4 50 54.0
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 1.7e-06 57.0 53 54.7
Thecc.09G340200 Theobroma cacao HOM05D004188 ORTHO05D004445 1.7e-06 57.0 81 44.4
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 2.2e-06 56.6 67 50.7
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-06 56.6 48 58.3
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.2e-06 56.6 70 44.3
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 2.2e-06 56.6 71 39.4
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 2.9e-06 56.2 72 43.1
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 2.9e-06 56.2 73 42.5
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 2.9e-06 56.2 78 38.5
AT2G28440 Arabidopsis thaliana HOM05D011190 ORTHO05D013686 3.8e-06 55.8 61 47.5
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 3.8e-06 55.8 72 43.1
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 3.8e-06 55.8 74 41.9
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 3.8e-06 55.8 50 52.0
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 4.9e-06 55.5 57 47.4
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 6.4e-06 55.1 57 42.1
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 6.4e-06 55.1 43 69.8
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 6.4e-06 55.1 81 42.0
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 8.4e-06 54.7 74 43.2
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 8.4e-06 54.7 74 43.2
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 8.4e-06 54.7 87 43.7
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 8.4e-06 54.7 61 50.8
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 8.4e-06 54.7 73 41.1


User provided reference genes

Program Settings