Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.7e-175 619.4 355 100.0
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 1.2e-131 473.8 350 74.3
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 6.1e-96 355.1 358 65.9
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 5.3e-92 342.0 296 74.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 3.5e-91 339.3 292 73.3
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.0e-90 337.8 338 59.5
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.2e-90 336.7 331 63.7
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.5e-90 334.7 327 64.8
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.5e-89 334.0 390 59.2
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.5e-89 333.2 339 62.5
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 2.5e-89 333.2 327 64.5
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.2e-89 332.8 327 64.5
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 3.2e-89 332.8 364 59.1
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 9.4e-89 331.3 308 67.5
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 8.8e-87 324.7 334 60.5
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.2e-85 320.1 340 62.9
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 5.3e-84 315.5 329 61.7
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 7.7e-83 311.6 359 60.4
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.7e-82 310.5 296 60.8
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 1.9e-81 307.0 327 62.4
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.5e-81 306.6 336 58.9
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 1.2e-80 304.3 317 60.9
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.8e-79 300.4 337 54.3
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 3.4e-78 296.2 320 58.1
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 3.7e-77 292.7 315 57.5
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.4e-76 290.8 371 53.6
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 2.0e-75 287.0 365 53.4
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 7.7e-75 285.0 249 74.7
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.3e-74 284.3 362 55.5
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.7e-74 283.9 319 58.0
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 6.5e-74 282.0 337 52.2
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 7.2e-73 278.5 334 55.4
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 7.2e-73 278.5 173 80.9
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 2.1e-72 276.9 310 63.9
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 2.7e-72 276.6 171 82.5
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 6.1e-72 275.4 334 55.1
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 6.1e-72 275.4 172 80.2
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 8.0e-72 275.0 176 79.0
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.0e-71 274.6 326 54.3
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.4e-71 274.2 176 78.4
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.4e-71 274.2 176 78.4
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.4e-71 274.2 176 78.4
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 5.2e-71 272.3 334 56.6
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 6.8e-71 271.9 383 49.6
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 6.8e-71 271.9 175 78.9
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 6.8e-71 271.9 330 55.2
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 3.4e-70 269.6 336 53.0
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 9.8e-70 268.1 315 61.6
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.3e-69 267.7 327 52.0
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 1.7e-69 267.3 182 78.0
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.7e-69 267.3 329 56.5
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 2.8e-69 266.5 323 56.7
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 1.1e-68 264.6 335 50.7
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 1.8e-68 263.8 166 80.1
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 1.8e-68 263.8 166 80.1
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 2.4e-68 263.5 325 52.6
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.1e-68 263.1 348 50.0
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 7.0e-68 261.9 350 53.1
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.2e-67 261.2 313 57.2
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.6e-67 260.8 379 49.3
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 1.6e-67 260.8 171 76.6
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.0e-67 260.4 177 74.0
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 1.0e-66 258.1 317 54.6
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 5.0e-66 255.8 170 76.5
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.1e-65 254.6 336 54.2
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.2e-64 251.1 175 74.9
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 6.1e-64 248.8 177 72.9
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 6.1e-64 248.8 177 72.9
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 6.1e-64 248.8 359 49.9
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.8e-63 247.3 173 75.1
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 2.3e-63 246.9 362 47.5
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 3.0e-63 246.5 168 75.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 8.9e-63 245.0 173 73.4
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.6e-62 243.4 171 75.4
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.6e-62 243.4 359 51.8
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 4.4e-62 242.7 173 75.7
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.2e-61 240.4 258 53.9
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 2.8e-61 240.0 173 74.0
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 3.2e-60 236.5 156 77.6
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 7.0e-60 235.3 166 72.3
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.2e-59 234.6 275 58.9
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 2.0e-59 233.8 312 49.0
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 5.9e-59 232.3 178 68.5
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.0e-58 231.5 171 71.3
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 8.6e-58 228.4 289 50.9
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.9e-57 227.3 180 67.8
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 2.5e-57 226.9 343 48.1
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.6e-56 224.2 306 52.6
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.7e-56 222.6 169 69.8
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 4.7e-56 222.6 172 69.8
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 8.0e-56 221.9 313 54.3
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.4e-55 221.1 175 66.9
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 3.1e-55 219.9 203 62.1
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.2e-54 218.0 224 57.6
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 9.8e-54 214.9 306 52.3
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 6.0e-51 205.7 167 65.3
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 4.0e-47 193.0 303 47.5
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 5.2e-47 192.6 166 61.4
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 5.2e-47 192.6 124 76.6
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.5e-46 191.0 177 61.0
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 2.0e-46 190.7 167 61.7
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.7e-45 187.6 169 61.5
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.7e-45 187.6 143 68.5
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.7e-45 187.6 143 68.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 1.5e-41 174.5 104 82.7
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 2.6e-38 163.7 236 48.7
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 2.2e-37 160.6 118 73.7
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 3.3e-33 146.7 124 64.5
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-27 127.9 110 65.5
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 4.6e-27 126.3 71 87.3
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 1.0e-26 125.2 166 42.8
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.3e-26 124.8 172 42.4
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.8e-23 114.4 170 42.4
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.2e-22 111.7 64 89.1
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 3.4e-22 110.2 106 59.4
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 8.7e-18 95.5 73 68.5
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 7.6e-14 82.4 213 41.8
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.7e-13 81.3 107 48.6
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 3.8e-13 80.1 162 51.9
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 1.9e-12 77.8 245 35.1
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 9.3e-12 75.5 40 87.5
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 9.3e-12 75.5 61 60.7
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 2.1e-11 74.3 136 50.0
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.5e-11 73.6 39 87.2
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 8.7e-10 68.9 76 55.3
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 3.7e-08 63.5 41 75.6
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 6.9e-07 59.3 35 77.1
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 1.2e-06 58.5 41 68.3


User provided reference genes

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