Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.8e-94 348.6 177 100.0
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.1e-89 330.9 177 93.2
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 7.7e-84 313.9 177 89.3
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 5.0e-83 311.2 177 91.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.3e-82 308.5 177 88.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 4.2e-82 308.1 177 89.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 9.5e-82 307.0 177 89.8
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 6.1e-81 304.3 177 89.3
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.0e-80 302.0 177 88.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 5.2e-80 301.2 177 88.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.5e-79 299.7 180 86.1
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.9e-78 294.7 177 86.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 6.3e-78 294.3 166 89.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 6.3e-78 294.3 179 87.2
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 8.3e-78 293.9 172 86.0
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.1e-77 293.5 177 86.4
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.4e-77 292.4 179 83.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 5.4e-77 291.2 177 84.2
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 7.0e-77 290.8 177 84.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-76 290.0 180 86.1
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.2e-76 290.0 179 83.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.6e-76 289.7 177 82.5
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.6e-76 289.7 177 84.2
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.6e-76 289.7 179 83.8
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.5e-76 288.1 179 82.7
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 4.5e-76 288.1 176 85.8
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.0e-75 287.0 178 83.1
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.3e-75 285.8 182 83.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.9e-75 285.4 175 84.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 2.9e-75 285.4 177 84.7
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 3.9e-75 285.0 177 81.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.9e-75 285.0 175 84.6
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.9e-75 285.0 175 84.6
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 5.0e-75 284.6 178 84.3
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.6e-75 284.3 181 84.0
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.5e-74 283.1 177 81.4
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.5e-74 282.3 175 84.0
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 4.3e-74 281.6 180 81.7
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 4.3e-74 281.6 180 81.7
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 7.3e-74 280.8 176 82.4
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.2e-73 280.0 178 83.7
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.6e-73 279.6 178 80.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.6e-73 279.6 179 81.6
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.1e-73 279.3 177 83.6
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.7e-73 278.1 177 81.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-72 276.9 178 81.5
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.4e-72 276.6 175 81.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.8e-72 276.2 181 80.7
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 4.0e-72 275.0 173 81.5
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 6.8e-72 274.2 177 80.2
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 6.8e-72 274.2 177 80.2
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.8e-72 274.2 186 81.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 8.9e-72 273.9 186 81.7
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 8.9e-72 273.9 177 81.9
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.2e-71 273.5 177 79.7
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.2e-71 273.5 174 82.8
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.5e-71 273.1 177 79.7
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.5e-71 273.1 177 79.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 2.0e-71 272.7 179 80.4
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.6e-71 272.3 177 82.5
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.6e-71 272.3 179 81.6
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.6e-71 272.3 179 81.6
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.6e-71 272.3 181 77.9
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.4e-71 271.9 178 82.0
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 5.8e-71 271.2 178 80.9
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.8e-71 271.2 180 81.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 9.8e-71 270.4 174 83.3
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.3e-70 270.0 179 81.6
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.3e-70 270.0 178 82.0
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 3.7e-70 268.5 170 82.4
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 3.7e-70 268.5 165 83.6
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.9e-70 268.1 183 77.6
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.4e-70 267.7 180 78.9
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 6.4e-70 267.7 178 79.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 8.3e-70 267.3 177 78.5
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.1e-69 266.9 180 78.9
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.1e-69 266.9 186 80.1
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.1e-69 266.9 186 80.1
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.4e-69 266.5 179 79.9
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.9e-69 266.2 186 80.1
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.2e-69 265.4 179 79.3
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 9.2e-69 263.8 182 76.4
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.7e-68 262.3 186 78.0
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 6.0e-68 261.2 180 76.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 7.8e-68 260.8 172 78.5
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.3e-67 260.0 181 76.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 3.9e-67 258.5 177 78.5
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.9e-67 258.5 173 78.6
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.6e-67 257.3 179 75.4
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 8.6e-67 257.3 179 75.4
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 8.6e-67 257.3 179 76.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 8.6e-67 257.3 194 72.2
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.1e-66 256.9 179 76.5
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.5e-66 255.8 181 75.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 3.3e-66 255.4 182 74.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 5.6e-66 254.6 178 74.2
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 7.3e-66 254.2 181 73.5
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 7.3e-66 254.2 177 75.7
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.2e-65 253.4 180 75.6
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.1e-65 252.7 179 75.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 3.6e-65 251.9 172 75.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.1e-64 250.4 172 72.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.4e-64 250.0 182 73.6
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.8e-64 249.6 182 73.6
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 4.0e-64 248.4 177 74.6
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 5.2e-64 248.1 179 73.2
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 5.2e-64 248.1 178 72.5
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.8e-64 247.7 182 72.0
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.5e-63 246.5 185 74.6
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.6e-63 245.7 178 73.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 74.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.3e-62 243.4 152 79.6
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.7e-62 243.0 176 73.9
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.2e-62 242.7 167 75.4
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 2.9e-62 242.3 179 72.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-61 240.4 175 72.0
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.1e-61 240.4 179 73.2
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-61 238.8 179 72.6
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 5.4e-61 238.0 173 75.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 9.2e-61 237.3 174 71.3
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.1e-60 236.1 178 70.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 6.0e-60 234.6 151 78.8
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 3.9e-59 231.9 247 55.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 8.6e-59 230.7 172 70.3
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.6e-58 228.0 180 68.9
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 5.6e-58 228.0 170 70.6
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-57 226.9 157 78.3
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 6.2e-57 224.6 179 67.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 8.1e-57 224.2 158 75.9
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 8.1e-57 224.2 194 64.4
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.5e-52 208.8 121 83.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.6e-50 201.4 178 63.5
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 4.4e-47 191.8 179 58.1
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.4e-47 191.8 143 63.6
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.8e-46 188.7 175 58.9
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 3.8e-46 188.7 184 59.8
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.1e-45 187.2 154 61.7
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.1e-45 187.2 194 59.3
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 6.6e-43 177.9 185 55.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.3e-40 168.3 97 82.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-37 160.2 86 88.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.4e-37 160.2 176 53.4
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.3e-37 157.5 86 86.0
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.0e-35 152.5 176 50.6
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 4.3e-34 148.7 89 84.3
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 7.3e-34 147.9 118 72.0
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 3.6e-33 145.6 130 63.1
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 8.1e-33 144.4 112 68.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.7e-30 136.7 129 61.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.9e-30 135.2 118 64.4
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 4.8e-25 118.6 127 50.4
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 3.1e-24 115.9 118 47.5
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.5e-23 112.1 91 69.2
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.5e-23 112.1 91 69.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 6.5e-22 108.2 91 65.9
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-21 107.5 85 69.4
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 5.5e-21 105.1 105 45.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.3e-19 99.8 140 40.0
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-16 90.9 46 91.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-13 80.1 80 55.0
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.7e-12 76.3 65 61.5
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 7.9e-12 74.7 97 39.2
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.9e-10 70.1 70 57.1
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.5e-10 69.7 142 38.0
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.5e-10 69.7 85 48.2
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.0e-06 55.5 56 55.4


User provided reference genes

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