Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G001501 Manihot esculenta HOM05D002605 ORTHO05D002842 2.5e-60 235.3 127 100.0
Manes.04G162900 Manihot esculenta HOM05D002605 ORTHO05D002842 1.3e-37 159.8 120 75.0
Prupe.1G349300 Prunus persica HOM05D002605 ORTHO05D002842 4.9e-32 141.4 123 64.2
Actinidia04345 Actinidia chinensis HOM05D002605 ORTHO05D002842 1.9e-31 139.4 123 63.4
Potri.007G075400 Populus trichocarpa HOM05D002605 ORTHO05D002842 4.2e-31 138.3 123 63.4
Sabra07G0063700 Salix brachista HOM05D002605 ORTHO05D002842 9.3e-31 137.1 123 61.8
Potri.005G089000 Populus trichocarpa HOM05D002605 ORTHO05D002842 6.0e-30 134.4 123 61.8
Sabra05G0073200 Salix brachista HOM05D002605 ORTHO05D002842 7.9e-30 134.0 123 63.4
Cfa008777 Carpinus fangiana HOM05D002605 ORTHO05D002842 8.7e-29 130.6 123 61.8
CiPaw.05G172200 Carya illinoinensis HOM05D002605 ORTHO05D002842 4.3e-28 128.3 123 61.0
CSS0024357 Camellia sinensis var. sinensis HOM05D002605 ORTHO05D002842 8.2e-27 124.0 123 60.2
MD13G1003100 Malus domestica HOM05D002605 ORTHO05D002842 8.2e-27 124.0 123 61.0
Haze_11789 Corylus avellana HOM05D002605 ORTHO05D002842 1.1e-26 123.6 123 60.2
Rhsim12G0089300 Rhododendron simsii HOM05D002605 ORTHO05D002842 3.1e-26 122.1 120 60.8
Ciclev10031553m.g Citrus clementina HOM05D002605 ORTHO05D002842 4.0e-26 121.7 123 56.1
Hma1.2p1_0044F.1_g026300 Hydrangea macrophylla HOM05D002605 ORTHO05D002842 6.9e-26 120.9 123 57.7
Gohir.D04G149000 Gossypium hirsutum HOM05D002605 ORTHO05D002842 2.0e-25 119.4 121 59.5
Gorai.012G135500 Gossypium raimondii HOM05D002605 ORTHO05D002842 2.0e-25 119.4 121 59.5
Lj6C708T13 Lonicera japonica HOM05D002605 ORTHO05D002842 1.3e-24 116.7 123 56.1
Duzib248G0110 Durio zibethinus HOM05D002605 ORTHO05D002842 2.2e-24 115.9 123 56.9
Gohir.A04G109432 Gossypium hirsutum HOM05D002605 ORTHO05D002842 2.9e-24 115.5 121 57.0
TWI53G1397 Tripterygium wilfordii HOM05D002605 ORTHO05D002842 6.5e-24 114.4 119 58.0
Cpa.g.sc60.93 Carica papaya HOM05D002605 ORTHO05D002842 8.4e-24 114.0 123 53.7
Gohir.A03G166100 Gossypium hirsutum HOM05D002605 ORTHO05D002842 8.4e-24 114.0 123 55.3
Gorai.005G212200 Gossypium raimondii HOM05D002605 ORTHO05D002842 8.4e-24 114.0 123 54.5
Atru.chr11.1241 Acer truncatum HOM05D002605 ORTHO05D002842 1.1e-23 113.6 123 53.7
Sc10g0006740 Simmondsia chinensis HOM05D002605 ORTHO05D002842 1.4e-23 113.2 123 59.3
TWI74G1069 Tripterygium wilfordii HOM05D002605 ORTHO05D002842 1.4e-23 113.2 119 55.5
CANSAT78G0826 Cannabis sativa HOM05D002605 ORTHO05D002842 2.5e-23 112.5 127 55.1
vmacro15996 Vaccinium macrocarpon HOM05D002605 ORTHO05D002842 3.2e-23 112.1 120 57.5
COL.COLO4_33108 Corchorus olitorius HOM05D002605 ORTHO05D002842 5.5e-23 111.3 123 55.3
Gohir.D02G189500 Gossypium hirsutum HOM05D002605 ORTHO05D002842 7.1e-23 110.9 123 54.5
Lj6A713T76 Lonicera japonica HOM05D002605 ORTHO05D002842 9.3e-23 110.5 124 54.8
Oeu027931.1 Olea europaea HOM05D002605 ORTHO05D002842 9.3e-23 110.5 120 52.5
Lj3C846T17 Lonicera japonica HOM05D002605 ORTHO05D002842 2.7e-22 109.0 124 54.8
Migut.E00681 Erythranthe guttata HOM05D002605 ORTHO05D002842 6.0e-22 107.8 126 54.0
BcaB06g26066 Brassica carinata HOM05D002605 ORTHO05D002842 2.3e-21 105.9 123 52.8
DCAR_002606 Daucus carota HOM05D002605 ORTHO05D002842 3.9e-21 105.1 121 57.9
Eucgr.G02588 Eucalyptus grandis HOM05D002605 ORTHO05D002842 5.1e-21 104.8 124 53.2
BraA05t21801Z Brassica rapa HOM05D002605 ORTHO05D002842 6.7e-21 104.4 123 53.7
A03p41510 Brassica napus HOM05D002605 ORTHO05D002842 8.7e-21 104.0 121 53.7
BraA03t13305Z Brassica rapa HOM05D002605 ORTHO05D002842 8.7e-21 104.0 121 53.7
Thecc.02G154700 Theobroma cacao HOM05D002605 ORTHO05D002842 8.7e-21 104.0 123 55.3
AUR62033008 Chenopodium quinoa HOM05D002605 ORTHO05D002842 1.5e-20 103.2 125 52.0
Ca_11260_v3 Cicer arietinum L. HOM05D002605 ORTHO05D002842 1.5e-20 103.2 118 54.2
TAR622G0457 Trochodendron aralioides HOM05D002605 ORTHO05D002842 1.5e-20 103.2 125 54.4
BolC3t17367H Brassica oleracea HOM05D002605 ORTHO05D002842 1.9e-20 102.8 121 52.9
BcaC05g28386 Brassica carinata HOM05D002605 ORTHO05D002842 2.5e-20 102.4 120 51.7
BolC5t33188H Brassica oleracea HOM05D002605 ORTHO05D002842 2.5e-20 102.4 120 51.7
AUR62017732 Chenopodium quinoa HOM05D002605 ORTHO05D002842 2.5e-20 102.4 125 52.0
Thhalv10020748m.g Eutrema salsugineum HOM05D002605 ORTHO05D002842 2.5e-20 102.4 120 53.3
Hund08635 Selenicereus undatus HOM05D002605 ORTHO05D002842 3.3e-20 102.1 120 50.8
A05p29140 Brassica napus HOM05D002605 ORTHO05D004431 4.3e-20 101.7 123 52.0
C03p50830 Brassica napus HOM05D002605 ORTHO05D002842 7.4e-20 100.9 120 51.7
Glyma.20G102600 Glycine max HOM05D002605 ORTHO05D002842 7.4e-20 100.9 124 52.4
MSTRG.2069 Avicennia marina HOM05D002605 ORTHO05D002842 9.7e-20 100.5 129 50.4
C05p44540 Brassica napus HOM05D002605 ORTHO05D004431 9.7e-20 100.5 120 51.7
Carub.0003s1987 Capsella rubella HOM05D002605 ORTHO05D002842 9.7e-20 100.5 121 50.4
Nn4g25144 Nelumbo nucifera HOM05D002605 ORTHO05D002842 9.7e-20 100.5 127 48.8
Sp3g17990 Schrenkiella parvula HOM05D002605 ORTHO05D002842 1.3e-19 100.1 123 52.0
SalBow2G0240 Salvia bowleyana HOM05D002605 ORTHO05D002842 1.6e-19 99.8 122 51.6
AT3G19970 Arabidopsis thaliana HOM05D002605 ORTHO05D002842 2.2e-19 99.4 123 52.0
AL3G33620 Arabidopsis lyrata HOM05D002605 ORTHO05D002842 2.8e-19 99.0 123 52.0
CAN.G472.31 Capsicum annuum HOM05D002605 ORTHO05D002842 2.8e-19 99.0 120 52.5
Cc00_g09980 Coffea canephora HOM05D002605 ORTHO05D002842 4.8e-19 98.2 128 52.3
GSVIVG01034414001 Vitis vinifera HOM05D002605 ORTHO05D002842 6.3e-19 97.8 100 56.0
Nn3g18584 Nelumbo nucifera HOM05D002605 ORTHO05D002842 1.1e-18 97.1 127 47.2
Peaxi162Scf00129g00237 Petunia axillaris HOM05D002605 ORTHO05D002842 1.1e-18 97.1 124 54.0
Lalb_Chr06g0163951 Lupinus albus HOM05D002605 ORTHO05D002842 2.4e-18 95.9 125 48.8
Nitab4.5_0000486g0230 Nicotiana tabacum HOM05D002605 ORTHO05D002842 2.4e-18 95.9 120 50.8
Phvul.007G014300 Phaseolus vulgaris HOM05D002605 ORTHO05D002842 2.4e-18 95.9 125 49.6
THA.LOC104801595 Tarenaya hassleriana HOM05D002605 ORTHO05D002842 2.4e-18 95.9 123 50.4
AUR62032949 Chenopodium quinoa HOM05D002605 ORTHO05D002842 3.1e-18 95.5 122 51.6
Nitab4.5_0008280g0010 Nicotiana tabacum HOM05D002605 ORTHO05D002842 5.3e-18 94.7 123 50.4
MELO3C005068.2 Cucumis melo HOM05D002605 ORTHO05D002842 1.2e-17 93.6 124 51.6
Glyma.10G286500 Glycine max HOM05D002605 ORTHO05D002842 1.2e-17 93.6 125 49.6
Aa31LG8G6680 Aethionema arabicum HOM05D002605 ORTHO05D002842 1.5e-17 93.2 120 49.2
arahy.Tifrunner.gnm1.ann1.454AC4 Arachis hypogaea HOM05D002605 ORTHO05D002842 3.4e-17 92.0 139 44.6
unitig_749.g13341 Utricularia gibba HOM05D002605 ORTHO05D002842 3.4e-17 92.0 121 47.1
CARHR095500 Cardamine hirsuta HOM05D002605 ORTHO05D002842 4.5e-17 91.7 120 49.2
VMungo0720G0400 Vigna mungo HOM05D002605 ORTHO05D002842 5.9e-17 91.3 124 50.8
FvH4_4g37150 Fragaria vesca HOM05D002605 ORTHO05D002842 7.6e-17 90.9 120 51.7
Sed0012946 Sechium edule HOM05D002605 ORTHO05D002842 1.7e-16 89.7 122 50.0
PSO063G2536 Papaver somniferum HOM05D002605 ORTHO05D002842 2.2e-16 89.4 124 49.2
QL03p045458 Quercus lobata HOM05D002605 ORTHO05D002842 2.2e-16 89.4 130 47.7
FAN17G1320 Fragaria x ananassa HOM05D002605 ORTHO05D002842 2.9e-16 89.0 118 50.8
EL10Ac9g22982 Beta vulgaris HOM05D002605 ORTHO05D002842 5.0e-16 88.2 121 49.6
CsaV3_5G020750 Cucumis sativus L. HOM05D002605 ORTHO05D002842 6.5e-16 87.8 126 50.8
TPR.G4049 Trifolium pratense HOM05D002605 ORTHO05D002842 8.5e-16 87.4 120 50.0
DCAR_030357 Daucus carota HOM05D002605 ORTHO05D002842 1.1e-15 87.0 124 48.4
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.2e-15 85.5 121 50.4
Oeu006330.1 Olea europaea HOM05D002605 ORTHO05D002842 3.2e-15 85.5 91 53.8
PSO782G2004 Papaver somniferum HOM05D002605 ORTHO05D002842 3.2e-15 85.5 122 45.9
Medtr1g114600 Medicago truncatula HOM05D002605 ORTHO05D002842 5.5e-15 84.7 122 49.2
PGR142G2512 Punica granatum HOM05D002605 ORTHO05D002842 7.2e-15 84.3 123 48.8
ClCG01G008080 Citrullus lanatus HOM05D002605 ORTHO05D002842 9.4e-15 84.0 134 45.5
Nitab4.5_0001916g0060 Nicotiana tabacum HOM05D002605 ORTHO05D002842 1.2e-14 83.6 125 46.4
Lj5g0019717 Lotus japonicus HOM05D002605 ORTHO05D002842 1.6e-14 83.2 117 46.2
Lsat_1_v5_gn_3_34501 Lactuca sativa HOM05D002605 ORTHO05D002842 2.1e-14 82.8 120 48.3
RcHm_v2.0_Chr1g0365791 Rosa chinensis HOM05D002605 ORTHO05D002842 4.6e-14 81.6 123 45.5
Psat6g234120 Pisum sativum HOM05D002605 ORTHO05D002842 6.1e-14 81.3 124 46.0
RcHm_v2.0_Chr4g0409441 Rosa chinensis HOM05D002605 ORTHO05D002842 1.8e-13 79.7 120 45.8
PGSC0003DMG400002618 Solanum tuberosum HOM05D002605 ORTHO05D002842 1.8e-13 79.7 122 48.4
HanXRQChr06g0171701 Helianthus annuus HOM05D002605 ORTHO05D002842 3.9e-13 78.6 123 47.2
Ah.01g012760 Amaranthus hybridus HOM05D002605 ORTHO05D002842 1.5e-12 76.6 121 46.3
FAN06G0533 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.3e-12 75.1 122 46.7
FAN06G4016 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.3e-12 75.1 122 46.7
Aqoxy3G04314 Aquilegia oxysepala HOM05D002605 ORTHO05D002842 5.7e-12 74.7 127 43.3
Sopen02g004920 Solanum pennellii HOM05D002605 ORTHO05D002842 5.7e-12 74.7 121 47.1
FvH4_7g21480 Fragaria vesca HOM05D002605 ORTHO05D002842 9.7e-12 73.9 122 45.9
MBI06_g27488_MAGBIO Magnolia biondii HOM05D002605 ORTHO05D002842 1.3e-11 73.6 123 42.3
HanXRQChr17g0541061 Helianthus annuus HOM05D002605 ORTHO05D002842 3.7e-11 72.0 128 43.8
FAN03G2715 Fragaria x ananassa HOM05D002605 ORTHO05D002842 5.3e-10 68.2 122 45.9
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 6.9e-10 67.8 123 44.7
RcHm_v2.0_Chr4g0446951 Rosa chinensis HOM05D002605 ORTHO05D002842 6.9e-10 67.8 121 43.0
Solyc02g020890.4 Solanum lycopersicum HOM05D002605 ORTHO05D002842 1.2e-09 67.0 122 45.9
SGA_v2.0_scaffold65G22223 Striga asiatica HOM05D002605 ORTHO05D002842 1.2e-09 67.0 123 42.3
CDE05G3560 Ceratophyllum demersum HOM05D002605 ORTHO05D002842 4.5e-09 65.1 127 36.2
SHI21210 Sapria himalayana HOM05D002605 ORTHO05D002842 5.9e-09 64.7 96 45.8
ATR0618G294 Amborella trichopoda HOM05D002605 ORTHO05D002842 4.7e-06 55.1 128 34.4


User provided reference genes

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