Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 6.3e-228 793.9 440 100.0
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.3e-185 653.3 447 83.4
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.3e-169 600.1 444 73.0
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 3.4e-165 585.5 444 76.8
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 7.1e-163 577.8 460 72.8
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-162 577.0 444 71.6
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.5e-155 552.7 456 72.6
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.2e-155 552.0 448 69.0
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.1e-154 549.7 442 66.1
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.7e-154 549.3 442 66.3
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.8e-153 546.6 447 71.8
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 2.5e-152 542.7 472 65.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 3.7e-151 538.9 446 67.3
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 6.3e-151 538.1 447 68.0
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 6.3e-151 538.1 446 68.4
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 2.4e-150 536.2 445 67.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 9.1e-150 534.3 444 67.3
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.2e-149 533.9 448 69.6
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.2e-149 533.9 454 70.7
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 3.4e-149 532.3 501 61.1
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.5e-149 531.9 445 67.2
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.7e-148 530.0 450 66.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.0e-148 528.5 444 67.3
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 8.5e-148 527.7 444 67.3
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 8.5e-148 527.7 444 67.3
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.2e-147 525.4 447 70.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 4.2e-147 525.4 460 63.7
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.2e-147 525.4 444 67.1
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 9.4e-147 524.2 447 69.8
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-146 523.9 444 67.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-146 523.1 444 66.7
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 4.7e-146 521.9 454 68.5
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.3e-145 519.6 442 63.8
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.6e-144 516.2 447 64.7
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 5.7e-144 515.0 444 64.4
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 3.7e-143 512.3 449 69.9
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.3e-143 511.5 447 67.6
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.4e-142 510.4 450 64.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.8e-142 510.0 446 63.9
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 2.4e-142 509.6 448 64.3
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 5.3e-142 508.4 441 69.8
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 5.3e-142 508.4 449 63.9
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 7.0e-142 508.1 443 68.8
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 7.0e-142 508.1 443 68.8
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 9.1e-142 507.7 448 64.1
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 9.1e-142 507.7 442 64.5
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.2e-141 507.3 453 70.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.0e-141 506.5 446 63.5
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.5e-141 505.8 447 63.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.5e-141 505.4 446 65.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.9e-141 505.0 434 65.9
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.0e-140 504.2 454 62.1
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.9e-140 502.7 449 63.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.0e-140 501.9 445 64.0
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 4.2e-139 498.8 443 63.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 5.5e-139 498.4 454 61.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 7.2e-139 498.0 443 63.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 9.4e-139 497.7 442 62.9
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 9.4e-139 497.7 443 63.9
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.2e-138 497.3 449 67.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.7e-138 495.4 443 62.5
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 8.0e-138 494.6 444 67.3
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.4e-137 493.8 453 61.4
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.8e-137 493.4 444 67.3
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 3.0e-137 492.7 494 59.1
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-137 492.7 453 62.5
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 8.8e-137 491.1 445 67.9
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.1e-136 490.7 443 62.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.1e-136 490.7 459 62.7
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.6e-136 489.6 455 61.8
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 9.7e-136 487.6 454 61.2
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.2e-135 486.5 437 65.2
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 6.3e-135 485.0 447 66.7
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 7.0e-134 481.5 447 60.9
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.6e-133 480.3 457 61.7
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 2.6e-133 479.6 443 64.1
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.5e-133 478.8 445 62.7
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.0e-132 477.6 443 63.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.0e-132 477.6 433 62.4
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.3e-132 477.2 443 64.6
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.3e-132 477.2 444 65.8
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 1.7e-132 476.9 475 58.9
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 5.0e-132 475.3 454 61.7
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.5e-132 474.6 446 65.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 4.2e-131 472.2 443 60.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 4.2e-131 472.2 440 61.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 9.4e-131 471.1 436 67.7
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 8.0e-130 468.0 498 56.2
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.0e-129 467.6 442 64.7
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.8e-129 466.8 458 59.8
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 4.4e-128 462.2 456 58.3
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 5.7e-128 461.8 444 60.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.3e-127 460.7 458 59.8
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.2e-127 459.9 458 59.2
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 5.3e-126 455.3 470 61.7
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 7.0e-126 454.9 456 58.8
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 9.1e-126 454.5 446 60.8
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.9e-125 451.8 443 64.1
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 4.2e-123 445.7 433 63.3
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 9.4e-123 444.5 447 60.4
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.0e-120 436.8 448 60.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 8.3e-119 431.4 435 62.3
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 3.1e-118 429.5 449 59.7
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 3.6e-114 416.0 445 60.2
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.3e-111 407.5 446 59.0
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.1e-110 402.5 450 53.3
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.0e-109 400.2 443 60.3
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.6e-106 390.6 450 55.6
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 2.6e-104 383.3 450 57.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 2.2e-103 380.2 378 63.8
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.2e-102 376.3 378 64.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.1e-102 375.9 380 56.8
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 9.2e-102 374.8 293 66.6
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 3.5e-101 372.9 445 57.3
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 8.6e-100 368.2 486 49.6
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.3e-97 360.1 380 56.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 8.9e-97 358.2 305 68.5
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.4e-86 323.6 479 48.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.7e-84 317.4 434 50.7
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 3.9e-84 316.2 504 44.8
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 3.1e-81 306.6 437 46.2
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 2.2e-79 300.4 289 63.0
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-73 281.6 292 58.6
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-71 273.9 442 46.6
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.4e-70 270.4 442 46.6
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 7.1e-70 268.9 219 69.9
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.7e-58 229.9 169 68.6
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 7.9e-53 212.2 358 44.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.7e-51 206.1 126 78.6
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.0e-48 197.6 267 46.4
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.0e-48 197.6 267 46.4
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.9e-46 191.0 297 42.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.2e-32 145.2 238 45.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-32 144.1 193 47.7
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 3.4e-32 143.7 74 89.2
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.1e-30 138.7 288 38.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 7.9e-29 132.5 470 31.5
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.4e-28 131.7 69 88.4
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.9e-28 130.2 248 39.5
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.7e-27 126.3 72 81.9
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.3e-26 125.2 68 85.3
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 8.2e-26 122.5 137 58.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-25 120.9 69 81.2
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.5e-23 112.8 91 70.3
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.9e-22 111.3 117 48.7
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 8.0e-21 105.9 67 71.6
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.5e-19 101.7 142 40.1
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.5e-19 101.7 142 40.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 2.8e-18 97.4 558 24.6
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.2e-13 82.0 56 71.4
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 2.0e-11 74.7 94 52.1
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 7.7e-08 62.8 72 52.8
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 1.7e-07 61.6 129 38.0
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 2.5e-06 57.8 69 44.9
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 7.2e-06 56.2 65 50.8


User provided reference genes

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