Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 2.7e-119 432.2 247 100.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 4.5e-90 335.1 227 83.7
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.7e-84 315.5 226 77.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.0e-82 309.7 224 77.7
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.3e-81 306.2 224 75.9
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 8.6e-81 304.3 224 75.9
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.5e-80 303.5 226 74.3
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.5e-80 303.5 224 75.9
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.1e-79 299.7 226 74.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 8.0e-79 297.7 238 71.4
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 7.5e-77 291.2 228 71.5
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.2e-76 289.7 226 69.5
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.1e-75 287.3 226 72.1
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.4e-75 286.2 228 70.6
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.2e-74 283.9 269 63.6
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.7e-74 282.7 224 69.6
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.5e-74 282.3 226 71.7
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 2.9e-73 279.3 221 69.7
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.9e-72 276.6 228 68.0
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 3.3e-72 275.8 224 71.9
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.6e-71 273.5 219 68.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 2.8e-71 272.7 256 64.8
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.6e-71 272.3 223 70.4
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.0e-71 271.2 223 70.0
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.8e-70 270.0 209 71.8
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 3.1e-70 269.2 223 69.5
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 4.0e-70 268.9 227 68.7
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.0e-69 266.5 249 65.1
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 3.4e-69 265.8 230 68.3
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 3.4e-69 265.8 248 64.9
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 3.4e-69 265.8 223 70.4
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 7.5e-69 264.6 227 68.3
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 7.5e-69 264.6 227 68.3
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.9e-68 262.7 232 65.5
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.7e-68 262.3 227 65.6
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.4e-68 261.5 232 66.8
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 8.3e-68 261.2 224 66.1
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.9e-67 260.0 224 65.6
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 9.2e-67 257.7 234 65.4
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.6e-66 256.9 221 67.9
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 6.0e-66 255.0 227 64.8
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 6.6e-65 251.5 223 68.2
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 5.6e-64 248.4 215 67.0
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 7.3e-64 248.1 229 66.8
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.2e-63 247.3 219 69.4
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.1e-63 246.5 228 63.2
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 3.6e-63 245.7 228 64.5
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 4.7e-63 245.4 229 65.9
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.1e-62 244.2 225 64.4
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.0e-61 240.0 221 65.6
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.6e-61 239.6 216 66.2
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 5.8e-61 238.4 220 63.2
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.3e-60 237.3 222 65.3
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.3e-60 237.3 221 64.3
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 3.7e-60 235.7 227 59.5
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.1e-59 234.2 223 63.2
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.9e-59 233.4 218 64.2
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 4.1e-59 232.3 224 59.4
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.2e-58 230.7 223 62.8
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.6e-58 230.3 240 57.9
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 2.1e-58 229.9 260 55.8
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 3.5e-58 229.2 220 60.5
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 3.5e-58 229.2 222 62.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 4.6e-58 228.8 218 59.6
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.6e-58 228.8 264 56.1
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.3e-57 226.5 216 63.4
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 5.1e-57 225.3 210 63.3
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 6.6e-57 224.9 227 59.5
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 6.6e-57 224.9 218 59.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 6.6e-57 224.9 266 54.9
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.5e-56 223.0 231 58.0
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 4.3e-56 222.2 223 61.0
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 7.3e-56 221.5 224 60.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 9.5e-56 221.1 228 61.0
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 4.7e-55 218.8 222 59.0
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.4e-54 217.2 226 58.0
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.4e-54 217.2 229 59.0
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.8e-54 216.9 222 61.7
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 2.3e-54 216.5 223 59.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.3e-54 216.5 221 59.7
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 4.0e-54 215.7 217 59.0
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 5.2e-54 215.3 223 57.8
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-53 214.2 222 57.7
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.5e-53 213.8 219 60.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.6e-53 213.0 221 58.8
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.6e-53 213.0 236 54.7
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 3.4e-53 212.6 226 56.2
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.3e-52 210.7 221 58.4
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.1e-51 207.6 229 57.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.1e-51 207.6 230 56.1
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.4e-51 207.2 221 57.5
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.4e-51 207.2 221 57.5
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.4e-51 206.5 222 58.6
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 7.1e-51 204.9 216 58.8
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 5.1e-49 198.7 268 49.3
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 5.1e-49 198.7 268 49.3
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 5.1e-49 198.7 334 44.0
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 8.6e-49 198.0 183 66.1
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 8.6e-49 198.0 180 64.4
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 8.6e-49 198.0 180 64.4
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.9e-48 196.8 218 57.3
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 9.6e-48 194.5 220 55.0
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 9.6e-48 194.5 213 56.8
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.8e-47 193.0 180 60.0
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 6.2e-47 191.8 230 53.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 8.1e-47 191.4 220 53.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 8.1e-47 191.4 220 53.2
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 8.1e-47 191.4 217 55.8
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 8.1e-47 191.4 218 54.6
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 4.0e-46 189.1 219 53.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 4.0e-46 189.1 219 53.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 4.0e-46 189.1 219 53.4
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 4.4e-45 185.7 223 50.7
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 9.9e-45 184.5 221 54.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 4.9e-44 182.2 221 51.1
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 4.9e-44 182.2 213 55.4
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 6.4e-44 181.8 213 54.5
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.7e-41 173.7 214 49.5
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.0e-41 172.9 217 52.1
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.3e-39 167.5 169 59.2
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.1e-38 162.9 308 41.6
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.0e-37 160.2 215 49.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.0e-37 160.2 215 49.8
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 2.6e-37 159.8 169 62.7
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.2e-34 151.0 131 66.4
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 4.6e-34 149.1 218 47.7
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.0e-33 146.4 217 46.5
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.4e-30 137.5 160 53.8
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 5.8e-29 132.1 154 54.5
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 7.6e-29 131.7 216 44.4
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.7e-28 130.6 94 73.4
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 3.3e-24 116.3 149 52.3
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 9.0e-22 108.2 216 38.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 1.0e-20 104.8 162 46.3
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 8.4e-20 101.7 247 34.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.2e-19 99.8 131 53.4
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 4.3e-16 89.4 72 62.5
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.5e-13 80.9 91 50.5
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.6e-13 80.1 79 62.0
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 1.4e-11 74.3 222 34.7
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 6.1e-10 68.9 132 37.9
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.7e-09 65.5 43 74.4
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 6.7e-09 65.5 39 79.5
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 8.7e-09 65.1 154 38.3
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 1.1e-08 64.7 53 64.2
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 1.1e-08 64.7 53 64.2
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.5e-08 64.3 43 74.4
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 1.5e-08 64.3 86 44.2
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 1.9e-08 63.9 91 47.3
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 7.4e-08 62.0 220 30.9
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 6.9e-06 55.5 63 49.2
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 9.0e-06 55.1 67 50.7


User provided reference genes

Program Settings