Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.10G016633 Manihot esculenta HOM05D004319 ORTHO05D005433 6.5e-63 243.8 117 100.0
Manes.07G126300 Manihot esculenta HOM05D004319 ORTHO05D005433 2.0e-43 179.1 95 90.5
Manes.07G126500 Manihot esculenta HOM05D004319 ORTHO05D005433 2.6e-43 178.7 95 90.5
Gorai.013G019400 Gossypium raimondii HOM05D004319 ORTHO05D005433 8.3e-42 173.7 95 86.3
Sabra10G0147700 Salix brachista HOM05D004319 ORTHO05D005433 8.3e-42 173.7 95 86.3
Duzib114G0905 Durio zibethinus HOM05D004319 ORTHO05D005433 1.1e-41 173.3 95 85.3
Gohir.A13G016400 Gossypium hirsutum HOM05D004319 ORTHO05D005433 1.1e-41 173.3 95 85.3
CANSAT56G2826 Cannabis sativa HOM05D004319 ORTHO05D005433 1.8e-41 172.6 95 85.3
Gohir.D13G017500 Gossypium hirsutum HOM05D004319 ORTHO05D005433 2.4e-41 172.2 95 84.2
Thecc.10G025300 Theobroma cacao HOM05D004319 ORTHO05D005433 2.4e-41 172.2 95 85.3
TWI73G0284 Tripterygium wilfordii HOM05D004319 ORTHO05D005433 2.4e-41 172.2 94 85.1
Potri.010G192000 Populus trichocarpa HOM05D004319 ORTHO05D005433 4.1e-41 171.4 95 85.3
Duzib106G1285 Durio zibethinus HOM05D004319 ORTHO05D005433 5.4e-41 171.0 95 84.2
Glyma.14G061600 Glycine max HOM05D004319 ORTHO05D005433 7.0e-41 170.6 95 84.2
MD07G1215300 Malus domestica HOM05D004319 ORTHO05D005433 7.0e-41 170.6 94 84.0
CiPaw.02G190500 Carya illinoinensis HOM05D004319 ORTHO05D005433 9.1e-41 170.2 95 84.2
COL.COLO4_25650 Corchorus olitorius HOM05D004319 ORTHO05D005433 9.1e-41 170.2 95 83.2
Glyma.11G227900 Glycine max HOM05D004319 ORTHO05D005433 1.6e-40 169.5 95 83.2
Glyma.18G029500 Glycine max HOM05D004319 ORTHO05D005433 1.6e-40 169.5 95 83.2
TWI53G0350 Tripterygium wilfordii HOM05D004319 ORTHO05D005433 1.6e-40 169.5 94 83.0
Cfa001356 Carpinus fangiana HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 84.2
MELO3C008285.2 Cucumis melo HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 84.2
CsaV3_6G001680 Cucumis sativus L. HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 84.2
Gohir.A10G233100 Gossypium hirsutum HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 83.2
Gohir.D10G245400 Gossypium hirsutum HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 83.2
Gorai.011G283100 Gossypium raimondii HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 83.2
Prupe.2G247200 Prunus persica HOM05D004319 ORTHO05D005433 2.7e-40 168.7 95 83.2
ClCG11G006300 Citrullus lanatus HOM05D004319 ORTHO05D005433 3.5e-40 168.3 95 84.2
THA.LOC104809927 Tarenaya hassleriana HOM05D004319 ORTHO05D005433 3.5e-40 168.3 95 84.2
Ca_17153_v3 Cicer arietinum L. HOM05D004319 ORTHO05D005433 5.9e-40 167.5 95 84.2
MD01G1148100 Malus domestica HOM05D004319 ORTHO05D005433 7.7e-40 167.2 95 82.1
Haze_17192 Corylus avellana HOM05D004319 ORTHO05D005433 1.0e-39 166.8 94 84.0
Lalb_Chr15g0084221 Lupinus albus HOM05D004319 ORTHO05D005433 1.0e-39 166.8 95 83.2
CiPaw.01G296400 Carya illinoinensis HOM05D004319 ORTHO05D005433 1.3e-39 166.4 95 83.2
Ca_05939_v3 Cicer arietinum L. HOM05D004319 ORTHO05D005433 1.7e-39 166.0 95 84.2
Sed0000856 Sechium edule HOM05D004319 ORTHO05D005433 1.7e-39 166.0 95 82.1
Thecc.04G298200 Theobroma cacao HOM05D004319 ORTHO05D005433 2.3e-39 165.6 95 82.1
TAR369G0377 Trochodendron aralioides HOM05D004319 ORTHO05D005433 2.3e-39 165.6 95 80.0
Nn2g14829 Nelumbo nucifera HOM05D004319 ORTHO05D005433 2.9e-39 165.2 95 81.1
Phvul.001G241100 Phaseolus vulgaris HOM05D004319 ORTHO05D005433 3.8e-39 164.9 95 81.1
Sed0009807 Sechium edule HOM05D004319 ORTHO05D005433 3.8e-39 164.9 95 82.1
THA.LOC104810078 Tarenaya hassleriana HOM05D004319 ORTHO05D005433 3.8e-39 164.9 95 82.1
PSO339G4101 Papaver somniferum HOM05D004319 ORTHO05D005433 5.0e-39 164.5 95 81.1
PSO801G0608 Papaver somniferum HOM05D004319 ORTHO05D005433 5.0e-39 164.5 95 81.1
VMungo1383G3192 Vigna mungo HOM05D004319 ORTHO05D005433 5.0e-39 164.5 95 81.1
ECA232G0842 Erigeron canadensis HOM05D004319 ORTHO05D005433 6.6e-39 164.1 95 81.1
Medtr3g070190 Medicago truncatula HOM05D004319 ORTHO05D005433 6.6e-39 164.1 95 82.1
GSVIVG01016359001 Vitis vinifera HOM05D004319 ORTHO05D005433 6.6e-39 164.1 95 83.2
Cpa.g.sc19.202 Carica papaya HOM05D004319 ORTHO05D005433 1.1e-38 163.3 95 82.1
Lalb_Chr20g0116571 Lupinus albus HOM05D004319 ORTHO05D005433 1.1e-38 163.3 95 82.1
Medtr5g082000 Medicago truncatula HOM05D004319 ORTHO05D005433 1.1e-38 163.3 95 82.1
Ciclev10032098m.g Citrus clementina HOM05D004319 ORTHO05D005433 1.5e-38 162.9 95 80.0
TAR623G1287 Trochodendron aralioides HOM05D004319 ORTHO05D005433 1.5e-38 162.9 95 80.0
Cc02_g06830 Coffea canephora HOM05D004319 ORTHO05D005433 3.3e-38 161.8 95 80.0
MBI06_g08188_MAGBIO Magnolia biondii HOM05D004319 ORTHO05D005433 3.3e-38 161.8 95 78.9
Nn1g00865 Nelumbo nucifera HOM05D004319 ORTHO05D005433 3.3e-38 161.8 95 78.9
Psat2g034600 Pisum sativum HOM05D004319 ORTHO05D005433 3.3e-38 161.8 95 81.1
Glyma.02G254900 Glycine max HOM05D004319 ORTHO05D005433 4.2e-38 161.4 95 82.1
ECA238G0079 Erigeron canadensis HOM05D004319 ORTHO05D005433 5.5e-38 161.0 95 80.0
HanXRQChr07g0202471 Helianthus annuus HOM05D004319 ORTHO05D005433 5.5e-38 161.0 95 78.9
Oeu039013.1 Olea europaea HOM05D004319 ORTHO05D005433 5.5e-38 161.0 95 77.9
TPR.G19852 Trifolium pratense HOM05D004319 ORTHO05D005433 5.5e-38 161.0 95 81.1
DCAR_032139 Daucus carota HOM05D004319 ORTHO05D005433 7.2e-38 160.6 95 78.9
HanXRQChr14g0460011 Helianthus annuus HOM05D004319 ORTHO05D005433 7.2e-38 160.6 95 78.9
Psat5g126960 Pisum sativum HOM05D004319 ORTHO05D005433 9.5e-38 160.2 95 80.0
Aa31LG5G19620 Aethionema arabicum HOM05D004319 ORTHO05D005433 1.6e-37 159.5 95 77.9
Lj8C71T5 Lonicera japonica HOM05D004319 ORTHO05D005433 1.6e-37 159.5 95 78.9
Actinidia13922 Actinidia chinensis HOM05D004319 ORTHO05D005433 3.6e-37 158.3 95 77.9
AL4G37580 Arabidopsis lyrata HOM05D004319 ORTHO05D005433 3.6e-37 158.3 95 78.9
AL624U10010 Arabidopsis lyrata HOM05D004319 ORTHO05D005433 3.6e-37 158.3 95 78.9
CDE04G2342 Ceratophyllum demersum HOM05D004319 ORTHO05D005433 3.6e-37 158.3 95 80.0
Sp4g22300 Schrenkiella parvula HOM05D004319 ORTHO05D005433 4.7e-37 157.9 95 77.9
EL10Ac7g16132 Beta vulgaris HOM05D004319 ORTHO05D005433 6.1e-37 157.5 95 78.9
BcaB01g03583 Brassica carinata HOM05D004319 ORTHO05D005433 6.1e-37 157.5 95 78.9
C03p26570 Brassica napus HOM05D004319 ORTHO05D005433 6.1e-37 157.5 95 78.9
Carub.0004s2213 Capsella rubella HOM05D004319 ORTHO05D005433 8.0e-37 157.1 95 77.9
CARHR134940 Cardamine hirsuta HOM05D004319 ORTHO05D005433 8.0e-37 157.1 95 77.9
Peaxi162Scf00957g00227 Petunia axillaris HOM05D004319 ORTHO05D005433 8.0e-37 157.1 95 77.9
Sc12g0000910 Simmondsia chinensis HOM05D004319 ORTHO05D005433 8.0e-37 157.1 95 77.9
Aqoxy2G03884 Aquilegia oxysepala HOM05D004319 ORTHO05D005433 1.0e-36 156.8 95 77.9
A05p06430 Brassica napus HOM05D004319 ORTHO05D005433 1.0e-36 156.8 95 76.8
BraA05t19611Z Brassica rapa HOM05D004319 ORTHO05D005433 1.0e-36 156.8 95 76.8
Eucgr.B01698 Eucalyptus grandis HOM05D004319 ORTHO05D005433 1.0e-36 156.8 95 77.9
Eucgr.B02106 Eucalyptus grandis HOM05D004319 ORTHO05D005433 1.0e-36 156.8 95 77.9
TPR.G16290 Trifolium pratense HOM05D004319 ORTHO05D005433 1.0e-36 156.8 95 78.9
Actinidia29683 Actinidia chinensis HOM05D004319 ORTHO05D005433 1.4e-36 156.4 95 76.8
PGR044G0899 Punica granatum HOM05D004319 ORTHO05D005433 1.4e-36 156.4 95 78.9
Rhsim09G0172500 Rhododendron simsii HOM05D004319 ORTHO05D005433 1.4e-36 156.4 95 76.8
A03p22410 Brassica napus HOM05D004319 ORTHO05D005433 1.8e-36 156.0 95 77.9
AUR62001677 Chenopodium quinoa HOM05D004319 ORTHO05D005433 1.8e-36 156.0 95 77.9
AUR62020103 Chenopodium quinoa HOM05D004319 ORTHO05D005433 1.8e-36 156.0 95 77.9
HPP92_018195 Vanilla planifolia HOM05D004319 ORTHO05D005433 1.8e-36 156.0 95 76.8
BcaC01g05449 Brassica carinata HOM05D004319 ORTHO05D005433 2.3e-36 155.6 95 77.9
BolC3t15043H Brassica oleracea HOM05D004319 ORTHO05D005433 2.3e-36 155.6 95 77.9
BraA03t11469Z Brassica rapa HOM05D004319 ORTHO05D005433 2.3e-36 155.6 95 77.9
CSS0043457 Camellia sinensis var. sinensis HOM05D004319 ORTHO05D005433 2.3e-36 155.6 95 77.9
Hma1.2p1_1409F.1_g281690 Hydrangea macrophylla HOM05D004319 ORTHO05D005433 2.3e-36 155.6 95 75.8
BcaB02g09062 Brassica carinata HOM05D004319 ORTHO05D005433 3.0e-36 155.2 95 75.8
C04p07500 Brassica napus HOM05D004319 ORTHO05D005433 3.0e-36 155.2 95 75.8
BolC4t22368H Brassica oleracea HOM05D004319 ORTHO05D005433 3.0e-36 155.2 95 75.8
Thhalv10016933m.g Eutrema salsugineum HOM05D004319 ORTHO05D005433 4.0e-36 154.8 95 75.8
Ah.15g099780 Amaranthus hybridus HOM05D004319 ORTHO05D005433 6.8e-36 154.1 95 76.8
Dinv20962 Davidia involucrata HOM05D004319 ORTHO05D005433 6.8e-36 154.1 95 75.8
Dinv20981 Davidia involucrata HOM05D004319 ORTHO05D005433 6.8e-36 154.1 95 75.8
Solyc11g013440.2 Solanum lycopersicum HOM05D004319 ORTHO05D005433 1.2e-35 153.3 95 73.7
Sopen11g008430 Solanum pennellii HOM05D004319 ORTHO05D005433 1.2e-35 153.3 95 73.7
CAN.G255.4 Capsicum annuum HOM05D004319 ORTHO05D005433 1.5e-35 152.9 95 73.7
Lj6g0024956 Lotus japonicus HOM05D004319 ORTHO05D005433 1.5e-35 152.9 95 76.8
Atru.chr12.232 Acer truncatum HOM05D004319 ORTHO05D005433 2.0e-35 152.5 95 76.8
Ah.08g220830 Amaranthus hybridus HOM05D004319 ORTHO05D005433 2.6e-35 152.1 95 75.8
ATR1127G008 Amborella trichopoda HOM05D004319 ORTHO05D005433 2.6e-35 152.1 95 72.6
Hund18856 Selenicereus undatus HOM05D004319 ORTHO05D005433 2.6e-35 152.1 95 74.7
PGSC0003DMG400027182 Solanum tuberosum HOM05D004319 ORTHO05D005433 3.4e-35 151.8 95 75.8
AT2G39990 Arabidopsis thaliana HOM05D004319 ORTHO05D005433 4.4e-35 151.4 95 74.7
Nitab4.5_0004737g0040 Nicotiana tabacum HOM05D004319 ORTHO05D005433 4.4e-35 151.4 95 72.6
MSTRG.8969 Avicennia marina HOM05D004319 ORTHO05D005433 5.7e-35 151.0 95 77.9
Nitab4.5_0000051g0230 Nicotiana tabacum HOM05D004319 ORTHO05D005433 5.7e-35 151.0 95 73.7
Zm00001eb356180 Zea mays HOM05D004319 ORTHO05D005433 5.7e-35 151.0 95 74.7
Nitab4.5_0004338g0100 Nicotiana tabacum HOM05D004319 ORTHO05D005433 9.8e-35 150.2 95 74.7
PGSC0003DMG400027787 Solanum tuberosum HOM05D004319 ORTHO05D005433 1.3e-34 149.8 95 71.6
Nitab4.5_0002100g0070 Nicotiana tabacum HOM05D004319 ORTHO05D005433 1.7e-34 149.4 95 73.7
Solyc05g052690.4 Solanum lycopersicum HOM05D004319 ORTHO05D005433 1.7e-34 149.4 95 74.7
Sopen05g031210 Solanum pennellii HOM05D004319 ORTHO05D005433 1.7e-34 149.4 95 74.7
Zm00001eb267470 Zea mays HOM05D004319 ORTHO05D005433 2.2e-34 149.1 95 73.7
RcHm_v2.0_Chr1g0369531 Rosa chinensis HOM05D004319 ORTHO05D005433 1.1e-33 146.7 110 69.1
FAN10G3467 Fragaria x ananassa HOM05D004319 ORTHO05D005433 1.8e-33 146.0 109 68.8
FvH4_7g24110 Fragaria vesca HOM05D004319 ORTHO05D005433 4.1e-33 144.8 109 67.9
FAN01G1285 Fragaria x ananassa HOM05D004319 ORTHO05D005433 4.1e-33 144.8 109 67.9
Os05g0104800 Oryza sativa ssp. japonica HOM05D004319 ORTHO05D005433 5.4e-33 144.4 95 70.5
SalBow6G1306 Salvia bowleyana HOM05D004319 ORTHO05D005433 5.4e-33 144.4 95 75.8
SGA_v2.0_scaffold44G16706 Striga asiatica HOM05D004319 ORTHO05D005433 9.2e-33 143.7 95 71.6
Migut.F00700 Erythranthe guttata HOM05D004319 ORTHO05D005433 1.6e-32 142.9 95 73.7
FAN03G2018 Fragaria x ananassa HOM05D004319 ORTHO05D005433 1.6e-32 142.9 109 67.9
FAN06G4692 Fragaria x ananassa HOM05D004319 ORTHO05D005433 1.6e-32 142.9 109 67.0
Lsat_1_v5_gn_2_121560 Lactuca sativa HOM05D004319 ORTHO05D005433 2.9e-31 138.7 95 72.6
Oeu038001.1 Olea europaea HOM05D004319 ORTHO05D005433 5.0e-31 137.9 83 74.7
EL10Ac7g16137 Beta vulgaris HOM05D004319 ORTHO05D005433 1.0e-28 130.2 97 69.1
SEGI_23595 Sequoiadendron giganteum HOM05D004319 ORTHO05D005433 1.8e-28 129.4 95 65.3
SGA_v2.0_scaffold60G21025 Striga asiatica HOM05D004319 ORTHO05D005433 4.9e-26 121.3 125 53.6
CBR_g51981 Chara braunii HOM05D004319 ORTHO05D005433 8.3e-26 120.6 97 59.8
Duzib128G0078 Durio zibethinus HOM05D004319 ORTHO05D005433 8.3e-26 120.6 92 63.0
SMO358G0553 Selaginella moellendorffii HOM05D004319 ORTHO05D005433 8.3e-26 120.6 95 60.0
Mapoly0084s0049 Marchantia polymorpha HOM05D004319 ORTHO05D005433 1.4e-25 119.8 96 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2489 Anthoceros agrestis HOM05D004319 ORTHO05D005433 2.0e-24 115.9 96 60.4
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 7.3e-22 107.5 150 46.0
Pp3c7_5560 Physcomitrium patens HOM05D004319 ORTHO05D005433 2.8e-21 105.5 95 52.6
Pp3c11_20930 Physcomitrium patens HOM05D004319 ORTHO05D005433 1.1e-20 103.6 95 51.6
Potri.008G065500 Populus trichocarpa HOM05D004319 ORTHO05D005433 3.2e-17 92.0 82 57.3
Cre16.g654500 Chlamydomonas reinhardtii HOM05D004319 ORTHO05D005433 1.2e-16 90.1 94 45.7
Dinv34417 Davidia involucrata HOM05D004319 ORTHO05D005433 1.6e-16 89.7 95 52.6
MCO13G167 Micromonas commoda HOM05D004319 ORTHO05D005433 1.8e-12 76.3 80 43.8
PRCOL_00004823 Prasinoderma coloniale HOM05D004319 ORTHO05D005433 1.8e-12 76.3 92 40.2
Hma1.2p1_2079F.1_g313450 Hydrangea macrophylla HOM05D004319 ORTHO05D005433 4.0e-12 75.1 51 66.7
COL.COLO4_31614 Corchorus olitorius HOM05D004319 ORTHO05D005433 4.4e-11 71.6 37 83.8
A04p30150 Brassica napus HOM05D004319 ORTHO05D040970 6.6e-07 57.8 47 61.7
BraA04t18494Z Brassica rapa HOM05D004319 ORTHO05D040970 6.6e-07 57.8 47 61.7
arahy.Tifrunner.gnm1.ann1.1H7P3M Arachis hypogaea HOM05D004319 ORTHO05D005433 8.6e-07 57.4 28 85.7
arahy.Tifrunner.gnm1.ann1.M3S5W1 Arachis hypogaea HOM05D004319 ORTHO05D005433 8.6e-07 57.4 28 85.7
Cfa022414 Carpinus fangiana HOM05D004319 ORTHO05D005433 2.5e-06 55.8 63 44.4


User provided reference genes

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