Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 2.6e-169 598.6 297 100.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 5.9e-145 517.7 296 86.8
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.6e-132 475.7 304 78.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.1e-130 470.3 304 77.6
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 5.4e-130 468.0 303 77.6
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 2.0e-129 466.1 304 76.6
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 7.8e-129 464.2 304 76.0
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.0e-128 463.8 304 77.3
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.7e-128 463.0 299 78.6
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.3e-128 462.6 297 77.8
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 3.9e-128 461.8 304 76.6
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.0e-128 461.5 304 76.0
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.1e-127 460.3 308 76.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.5e-127 459.1 305 76.4
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 3.3e-127 458.8 306 76.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.3e-127 458.8 302 77.5
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 4.3e-127 458.4 304 75.7
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 7.3e-127 457.6 304 75.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.8e-126 455.7 326 71.2
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.1e-125 452.2 304 73.7
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 8.9e-125 450.7 304 75.3
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.2e-124 450.3 297 75.1
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.0e-124 449.5 305 74.4
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 9.8e-124 447.2 304 72.7
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.3e-123 446.8 293 75.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.2e-123 446.0 304 73.0
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.4e-122 443.4 302 74.2
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.2e-121 440.3 302 73.2
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.6e-121 439.9 270 82.2
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.1e-121 439.5 305 71.5
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.0e-120 437.2 303 71.9
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.0e-120 437.2 279 74.9
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.3e-120 436.8 310 71.9
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.7e-120 436.4 305 70.8
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 5.1e-120 434.9 304 72.0
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 8.6e-120 434.1 280 75.7
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 8.6e-120 434.1 279 74.6
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.1e-119 433.7 269 79.6
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.9e-119 433.0 322 69.6
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.5e-119 432.6 278 78.8
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 9.5e-119 430.6 299 72.2
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-118 430.3 299 72.2
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.2e-118 430.3 303 71.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 1.2e-118 430.3 302 71.2
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.6e-118 429.9 269 79.2
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.6e-118 429.9 306 69.9
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.1e-118 429.5 339 66.4
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 2.8e-118 429.1 294 72.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 6.2e-118 427.9 300 72.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.1e-117 427.2 291 74.6
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.3e-117 426.0 305 71.1
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.3e-117 426.0 304 69.4
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.1e-117 425.6 297 71.4
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.1e-117 425.6 300 73.3
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 4.0e-117 425.2 281 75.4
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 5.2e-117 424.9 280 71.8
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 8.9e-117 424.1 277 73.6
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.0e-116 422.9 307 68.4
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.9e-115 419.1 292 71.6
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.7e-115 418.7 308 69.8
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 3.7e-115 418.7 300 70.7
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 4.9e-115 418.3 300 69.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.4e-115 417.9 298 70.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 8.3e-115 417.5 312 68.3
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.1e-114 417.2 358 63.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 7.1e-114 414.5 304 68.4
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.6e-113 413.3 301 67.8
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.6e-113 413.3 302 67.9
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 2.1e-113 412.9 284 71.1
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 4.6e-113 411.8 317 65.9
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 7.8e-113 411.0 302 67.5
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.0e-112 410.6 300 68.3
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.3e-112 410.2 302 67.9
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.3e-112 410.2 302 67.2
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.7e-112 409.8 290 70.3
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.5e-111 406.8 278 71.2
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 7.3e-111 404.4 248 81.0
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.2e-110 403.7 294 71.8
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 6.2e-110 401.4 303 67.0
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 8.9e-109 397.5 304 66.1
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.6e-108 396.0 297 66.7
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 3.4e-108 395.6 285 68.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-107 393.7 297 66.0
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 8.4e-107 391.0 284 69.4
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.1e-106 390.6 285 67.4
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 7.1e-106 387.9 311 64.6
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 9.2e-106 387.5 263 70.0
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-105 387.1 297 66.0
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 3.5e-105 385.6 281 68.7
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 8.7e-104 380.9 305 64.6
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.5e-103 380.2 322 61.2
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 3.3e-103 379.0 322 61.5
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.3e-103 379.0 282 70.2
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.9e-99 365.9 279 67.4
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 8.4e-99 364.4 284 65.5
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.1e-98 364.0 322 60.2
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.2e-98 362.1 280 65.0
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.7e-97 359.4 262 68.7
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.6e-94 350.1 258 67.1
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.6e-94 350.1 258 66.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.4e-93 347.1 263 67.7
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.8e-93 346.7 288 60.8
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.9e-93 344.7 263 68.1
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.3e-91 340.5 264 67.0
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 3.8e-91 339.0 261 64.8
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 9.3e-90 334.3 258 64.3
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.5e-89 332.4 249 69.5
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.3e-88 330.5 249 65.1
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 5.1e-88 328.6 251 65.7
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.7e-88 328.2 273 59.0
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 4.5e-84 315.5 215 71.6
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 5.8e-84 315.1 314 57.3
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 4.2e-82 308.9 249 61.0
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.0e-80 304.3 203 73.4
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.8e-80 303.5 226 65.9
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 2.3e-80 303.1 215 71.2
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.1e-79 300.8 255 63.5
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.1e-79 300.8 270 57.4
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 5.3e-77 292.0 249 59.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 9.4e-66 254.6 219 58.4
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.6e-57 227.3 296 45.6
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.6e-57 227.3 282 43.6
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 7.9e-57 224.9 255 49.8
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 6.3e-46 188.7 155 61.3
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.1e-45 188.0 121 74.4
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 4.1e-45 186.0 270 42.6
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 7.0e-45 185.3 122 74.6
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 3.8e-43 179.5 121 71.9
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 2.5e-42 176.8 258 41.1
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-36 156.8 146 54.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 6.5e-35 152.1 152 50.7
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.6e-33 147.5 85 83.5
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 5.4e-29 132.5 83 74.7
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 6.1e-25 119.0 105 61.0
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.2e-24 115.9 89 65.2
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 9.2e-21 105.1 288 28.5
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.5e-20 103.2 72 70.8
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.5e-18 97.1 253 30.0
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 5.6e-18 95.9 151 41.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.2e-17 94.7 105 50.5
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 2.3e-16 90.5 70 62.9
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 4.0e-16 89.7 302 27.8
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 5.8e-15 85.9 220 26.8
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.7e-14 84.3 65 60.0
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 3.7e-14 83.2 206 28.2
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.9e-13 80.9 87 46.0
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 5.4e-13 79.3 81 53.1
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.0e-12 77.4 51 64.7
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 6.0e-12 75.9 47 70.2
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 5.0e-11 72.8 311 25.1
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 1.9e-10 70.9 311 24.8
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.2e-09 68.2 50 62.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 4.0e-08 63.2 41 68.3
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 4.9e-06 56.2 72 41.7
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 4.9e-06 56.2 231 23.4


User provided reference genes

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