Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 3539.2 1826 100.0
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2931.4 1828 83.3
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2911.7 1831 82.6
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2909.8 1828 82.5
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2879.7 1864 80.7
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2852.8 1868 78.8
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2830.0 1837 79.4
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2820.0 1854 79.0
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2774.2 1812 79.4
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2767.3 1846 77.8
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2756.5 1834 77.9
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2751.9 1811 78.5
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2748.8 1838 78.2
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2735.3 1819 77.8
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2728.0 1843 77.3
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2723.3 1836 77.3
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2711.4 1822 77.2
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2698.3 1832 76.9
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2692.5 1812 77.4
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2688.3 1812 77.3
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2684.1 1821 76.5
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2680.2 1837 76.1
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2676.4 1838 76.6
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2671.3 1834 75.7
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2669.4 1842 75.7
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2663.6 1807 76.8
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2644.8 1840 74.0
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2635.5 1843 75.6
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2616.3 1847 75.1
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2608.6 1842 74.8
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2605.1 1822 74.5
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2599.7 1847 74.7
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2595.5 1847 75.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2588.5 1831 73.1
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2587.4 1830 73.1
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2586.6 1832 73.3
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2569.7 1830 72.6
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2569.3 1886 71.7
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2568.5 1831 72.6
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2560.4 1824 72.5
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2557.7 1826 72.7
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2553.1 1826 72.5
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2526.5 1835 71.4
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2525.4 1841 73.3
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2521.9 1861 73.4
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2512.3 1824 72.8
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2512.3 1833 71.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2493.8 1853 72.2
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2492.2 1910 70.1
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2488.8 1837 71.9
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2483.8 1833 71.5
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2481.8 1835 71.8
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2481.4 1799 72.8
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2478.4 1838 70.8
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2477.6 1844 71.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2477.6 1844 71.0
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2473.0 1807 71.2
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2471.0 1838 70.8
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2464.9 1837 70.9
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2405.2 1826 70.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2385.5 1838 69.7
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2379.4 1837 69.4
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2377.4 1838 69.7
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2372.4 1837 69.5
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2369.7 1829 69.2
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2364.7 1837 68.4
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2356.3 1839 68.5
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2326.6 1830 68.2
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2318.1 1831 68.0
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2315.0 1737 70.4
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2310.0 1825 67.5
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2290.0 1840 67.0
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2289.2 1832 67.5
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2280.8 1854 66.0
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2266.5 1824 67.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2250.7 1823 67.6
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2209.9 1831 66.3
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2209.1 1830 66.1
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2205.6 1839 65.7
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2201.0 1831 65.8
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2191.8 1832 65.9
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2185.2 1835 65.8
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2153.3 1830 64.5
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2149.8 1840 64.6
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2145.9 1830 64.8
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2127.8 1772 65.1
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2087.8 1833 63.9
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2068.1 1820 62.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2067.4 1820 62.9
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2063.9 1869 60.3
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2061.6 1816 63.1
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 2047.7 1837 62.3
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2046.9 1829 60.6
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1977.6 1825 60.2
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1913.3 1368 73.1
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1843.2 1848 55.5
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1832.0 1855 54.9
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1748.8 1493 64.4
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1747.6 1573 62.9
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1736.1 1802 55.4
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1730.3 1218 74.1
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1719.9 1341 67.3
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1715.7 1332 67.5
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1686.4 1697 55.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1615.9 1382 64.7
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1569.3 1305 64.4
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1536.9 1800 52.4
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1494.9 1189 65.9
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1374.8 1996 44.2
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1343.2 1099 68.3
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1285.0 1391 55.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1274.2 1001 67.8
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1270.4 1847 43.3
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1241.1 1150 59.7
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1198.7 1933 40.4
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1195.6 1962 40.8
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1167.9 1975 39.2
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1158.7 869 70.5
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 2.2e-266 923.7 1381 43.2
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 7.8e-264 915.2 1481 40.9
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 3.3e-230 803.5 522 79.1
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 6.1e-224 782.7 617 64.5
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 4.7e-216 756.5 481 79.4
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 2.0e-195 688.0 466 75.5
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 2.9e-194 684.1 608 60.7
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 8.0e-192 676.0 490 74.5
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.0e-182 644.8 561 62.2
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 5.4e-180 636.7 381 86.1
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 5.0e-178 630.2 487 70.6
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.9e-172 611.7 621 54.8
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 9.2e-172 609.4 354 84.5
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 2.7e-163 581.3 338 88.2
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 4.7e-160 570.5 423 66.2
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.0e-158 565.1 361 78.1
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.0e-138 499.6 393 70.5
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 4.5e-134 484.2 324 72.8
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 9.9e-134 483.0 433 62.4
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 3.8e-125 454.5 402 60.0
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 9.7e-121 439.9 264 82.6
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 1.5e-118 432.6 267 89.1
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.3e-77 295.8 305 58.7
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.9e-77 295.4 304 58.9
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.5e-76 293.1 309 59.9
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 3.4e-49 202.2 123 82.9
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 3.5e-46 192.2 131 71.0
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 3.8e-24 119.0 70 88.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.4e-23 117.1 118 53.4
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 1.8e-21 110.2 71 80.3
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.3e-19 104.0 70 75.7
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 4.0e-18 99.0 584 22.1
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 2.9e-16 92.8 96 56.2
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 8.4e-16 91.3 66 68.2
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.1e-14 86.7 70 62.9
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 3.5e-14 85.9 204 28.9
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 7.9e-14 84.7 68 61.8
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 2.3e-13 83.2 70 58.6
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.7e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-07 64.3 37 83.8
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 1.9e-07 63.5 198 28.3
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 9.3e-07 61.2 189 30.2
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.2e-06 60.8 71 54.9


User provided reference genes

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