Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 4.5e-280 967.2 478 100.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 2.8e-213 745.3 472 76.3
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 4.3e-206 721.5 508 71.3
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.8e-199 699.5 463 73.2
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 7.4e-198 694.1 465 74.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 5.9e-195 684.5 452 75.9
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 1.3e-194 683.3 470 71.9
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.2e-194 682.6 433 76.4
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 5.0e-194 681.4 440 75.7
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 5.0e-194 681.4 463 73.2
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 3.6e-192 675.2 470 69.6
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 8.0e-192 674.1 470 70.0
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 8.0e-192 674.1 468 72.6
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 2.3e-191 672.5 462 74.0
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 8.8e-191 670.6 465 71.2
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 8.8e-191 670.6 465 71.2
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.1e-190 670.2 474 69.4
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.6e-190 669.1 474 69.4
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.7e-189 666.4 478 68.2
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 3.7e-189 665.2 478 68.0
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.4e-188 662.5 443 73.4
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.1e-188 662.1 478 67.6
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 7.0e-188 661.0 455 71.2
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 3.5e-187 658.7 382 82.5
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 5.9e-187 657.9 373 83.1
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.9e-186 655.6 474 68.8
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.1e-185 653.7 436 73.9
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 4.2e-185 651.7 448 70.3
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 5.5e-185 651.4 481 69.9
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.2e-184 650.2 456 71.9
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 2.1e-184 649.4 374 82.4
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 2.3e-183 646.0 364 83.0
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 2.0e-182 642.9 470 68.1
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 3.4e-182 642.1 414 75.1
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 5.7e-182 641.3 428 73.4
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 9.8e-182 640.6 457 70.9
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.4e-180 636.7 408 77.0
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.4e-180 636.7 460 69.1
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 2.4e-180 636.0 392 78.6
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.7e-179 632.5 392 77.3
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.7e-179 632.5 465 67.1
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 4.5e-179 631.7 392 77.3
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 4.5e-179 631.7 392 77.6
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.0e-178 630.6 368 81.0
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.0e-178 630.6 420 74.3
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.3e-178 630.2 460 69.1
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.7e-178 629.8 392 77.0
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 2.2e-178 629.4 458 68.6
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 2.9e-178 629.0 393 77.1
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.9e-178 629.0 472 66.7
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 3.8e-178 628.6 368 80.7
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.2e-177 625.5 445 69.9
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 4.2e-177 625.2 377 79.8
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 9.4e-177 624.0 386 78.8
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 2.3e-175 619.4 432 72.5
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 5.2e-175 618.2 413 72.9
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 6.8e-175 617.8 431 71.0
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 6.8e-175 617.8 426 70.9
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 4.4e-174 615.1 446 68.6
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 9.8e-174 614.0 434 70.7
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 9.8e-174 614.0 453 68.2
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.3e-173 613.6 366 80.1
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.3e-173 613.6 452 67.3
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.2e-173 612.8 443 68.8
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.2e-173 612.8 449 68.8
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 2.2e-173 612.8 430 69.5
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 6.3e-173 611.3 460 66.1
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 6.3e-173 611.3 366 79.5
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 8.3e-173 610.9 369 78.9
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 5.4e-172 608.2 393 75.1
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 5.4e-172 608.2 458 67.2
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.2e-171 607.1 366 78.4
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.0e-171 606.3 393 75.3
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 1.5e-169 600.1 460 66.5
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.9e-169 599.7 460 66.3
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.6e-168 596.7 428 68.5
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 1.0e-167 594.0 392 74.0
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 4.4e-166 588.6 479 63.0
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 5.7e-166 588.2 400 71.5
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 5.7e-166 588.2 503 60.8
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.3e-165 587.0 463 64.8
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.3e-165 587.0 444 66.0
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 8.3e-165 584.3 470 63.0
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.6e-163 580.1 379 74.4
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 3.9e-162 575.5 552 55.6
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 2.1e-160 569.7 462 63.0
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 2.0e-158 563.1 370 73.8
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 7.5e-158 561.2 455 63.7
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.7e-157 560.1 452 63.3
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 4.9e-157 558.5 328 79.6
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 8.3e-157 557.8 331 78.5
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.1e-156 557.4 409 69.2
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.9e-156 556.6 434 64.5
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 5.4e-156 555.1 467 62.3
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 4.6e-155 552.0 367 73.6
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 8.1e-152 541.2 427 62.8
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.2e-150 537.3 431 63.3
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.9e-149 532.7 431 62.9
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 3.1e-143 512.7 286 82.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 2.0e-142 510.0 361 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 8.9e-135 484.6 372 61.6
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-127 461.1 335 64.8
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 3.1e-127 459.5 389 59.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 1.9e-124 450.3 352 60.2
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 9.0e-119 431.4 272 73.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.3e-112 411.0 289 64.4
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.6e-104 384.0 306 63.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 3.7e-104 382.9 242 76.0
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 8.2e-96 355.1 370 54.3
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.0e-93 348.2 224 73.2
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 9.7e-81 305.1 237 62.4
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.4e-71 273.9 315 46.0
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.7e-70 270.4 204 57.4
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.7e-70 270.4 204 57.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.7e-70 268.9 204 57.4
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.0e-69 266.2 204 56.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.2e-68 263.5 327 42.5
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 4.5e-54 216.5 209 54.1
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 4.4e-41 173.3 141 67.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-32 145.2 98 59.2
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 7.8e-22 109.4 149 43.0
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 3.9e-21 107.1 93 64.5
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.9e-15 88.2 84 59.5
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.3e-11 75.5 272 23.9
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.3e-11 75.5 267 21.3
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.8e-11 74.3 285 23.9
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.6e-11 73.9 274 24.5
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.6e-11 73.9 269 23.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 4.8e-11 73.6 284 25.7
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 8.1e-11 72.8 295 19.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 8.1e-11 72.8 295 19.7
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 8.1e-11 72.8 293 22.9
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.4e-10 72.0 285 23.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.8e-10 71.6 259 20.8
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.1e-10 70.9 295 19.7
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 5.3e-10 70.1 267 21.7
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.3e-10 70.1 276 23.2
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 6.9e-10 69.7 270 21.5
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 6.9e-10 69.7 295 19.7
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.5e-09 68.6 296 19.9
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 1.5e-09 68.6 295 19.7
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.0e-09 68.2 243 21.4
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.2e-08 64.7 270 20.4
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 2.2e-08 64.7 269 21.9
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 8.4e-08 62.8 272 21.0
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.1e-07 62.4 134 23.1
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.1e-07 62.4 269 19.7


User provided reference genes

Program Settings