Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 1.3e-295 1020.0 1069 100.0
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 1.4e-191 674.5 740 77.0
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 2.5e-185 653.7 737 75.0
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 9.8e-174 615.1 768 73.7
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 1.6e-168 597.8 755 70.9
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.8e-167 594.3 716 67.5
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 4.0e-167 593.2 774 63.3
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.4e-164 584.7 714 68.6
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 5.4e-164 582.8 751 68.7
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 2.5e-161 573.9 730 69.9
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 3.3e-161 573.5 749 66.1
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 1.8e-159 567.8 726 69.8
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 6.8e-159 565.8 734 70.0
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 1.7e-157 561.2 755 66.9
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 2.9e-157 560.5 719 75.0
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 6.4e-157 559.3 727 73.2
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 3.0e-154 550.4 752 69.8
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 1.6e-152 544.7 742 58.9
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 4.0e-151 540.0 750 66.0
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 4.4e-150 536.6 751 61.1
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.4e-148 531.6 752 68.6
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.4e-148 531.6 746 65.5
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 7.1e-148 529.3 746 65.4
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 7.1e-148 529.3 718 62.0
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 9.2e-148 528.9 757 61.8
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.2e-147 528.5 752 68.5
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.6e-147 528.1 746 65.3
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 7.8e-147 525.8 745 68.5
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 4.3e-145 520.0 715 72.6
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 9.6e-145 518.8 753 67.9
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 4.8e-144 516.5 740 68.1
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 5.3e-143 513.1 791 63.0
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 6.9e-143 512.7 747 61.8
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 2.0e-142 511.1 754 69.6
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 7.6e-142 509.2 791 63.0
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 3.9e-138 496.9 741 68.0
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 5.6e-137 493.0 751 69.8
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 9.6e-137 492.3 730 64.1
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 2.8e-136 490.7 847 61.6
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 6.2e-136 489.6 758 53.2
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 4.0e-135 486.9 760 61.8
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 5.3e-135 486.5 710 67.3
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 3.4e-134 483.8 755 63.0
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 4.5e-134 483.4 728 64.0
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 4.5e-134 483.4 747 64.3
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 1.3e-133 481.9 751 64.3
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 3.8e-133 480.3 751 63.4
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 6.4e-133 479.6 716 65.1
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 1.4e-132 478.4 745 67.5
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 1.9e-132 478.0 730 63.8
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 1.2e-131 475.3 712 67.1
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 2.1e-131 474.6 754 61.1
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 6.0e-131 473.0 743 62.7
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 1.0e-130 472.2 747 60.9
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 1.8e-130 471.5 748 64.8
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 6.7e-130 469.5 707 64.4
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 3.3e-129 467.2 748 67.0
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 5.6e-129 466.5 731 63.5
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 5.6e-129 466.5 760 67.5
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 1.6e-128 464.9 732 63.1
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 6.2e-128 463.0 750 62.0
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 1.4e-127 461.8 751 64.0
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 1.4e-127 461.8 745 67.4
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 3.4e-126 457.2 732 62.3
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 4.5e-126 456.8 746 66.8
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 4.5e-126 456.8 752 62.0
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.0e-125 455.7 733 58.5
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 1.5e-121 441.8 749 66.2
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.3e-121 440.7 749 66.6
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 1.1e-119 435.6 743 64.3
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 5.8e-118 429.9 744 63.7
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 1.0e-117 429.1 744 65.6
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 5.5e-116 423.3 746 61.7
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 9.3e-116 422.5 741 66.1
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 1.6e-115 421.8 743 60.8
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 1.1e-111 409.1 749 65.2
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 2.0e-110 404.8 747 57.7
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 1.0e-109 402.5 748 64.0
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 5.0e-109 400.2 730 60.1
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 7.9e-107 392.9 749 62.3
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 7.7e-94 349.7 646 65.8
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 1.5e-92 345.5 705 54.8
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 5.2e-90 337.0 755 60.5
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 3.8e-85 320.9 537 71.5
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 1.5e-84 318.9 538 66.7
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 1.4e-74 285.8 270 56.3
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 2.8e-72 278.1 273 54.2
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 2.8e-72 278.1 710 55.8
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 8.6e-69 266.5 541 58.6
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 2.0e-65 255.4 159 75.5
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 1.6e-62 245.7 529 58.0
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 1.6e-62 245.7 545 66.4
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 2.7e-62 245.0 194 58.8
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 9.5e-52 209.9 225 49.8
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 1.0e-45 189.9 568 53.5
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 1.3e-45 189.5 208 48.1
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.1e-42 179.9 395 32.7
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 2.8e-35 155.2 203 43.3
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 1.5e-33 149.4 572 55.4
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 2.4e-23 115.5 105 57.1
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 1.2e-22 113.2 83 66.3
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 5.6e-20 104.4 143 35.0
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 4.2e-15 88.2 87 50.6
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 4.3e-12 78.2 44 77.3
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 9.6e-12 77.0 118 37.3
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 3.7e-11 75.1 62 61.3
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.8e-10 72.8 109 35.8
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 5.3e-10 71.2 82 43.9
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 5.3e-10 71.2 57 63.2
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 9.0e-10 70.5 129 34.1
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 9.0e-10 70.5 118 33.9
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 1.2e-09 70.1 117 35.0
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 2.0e-09 69.3 118 33.9
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 2.0e-09 69.3 137 31.4
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 2.0e-09 69.3 126 32.5
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 2.0e-09 69.3 92 38.0
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 2.0e-09 69.3 118 33.9
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 2.6e-09 68.9 137 30.7
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 3.4e-09 68.6 124 31.5
CAN.G996.9 Capsicum annuum HOM05D002479 ORTHO05D002675 1.3e-08 66.6 137 29.9
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 1.7e-08 66.2 118 32.2
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 2.2e-08 65.9 118 31.4
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.9e-08 65.5 100 36.0
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 3.8e-08 65.1 146 28.8
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 3.8e-08 65.1 126 27.8
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 3.8e-08 65.1 214 27.6
CsaV3_5G040330 Cucumis sativus L. HOM05D002479 ORTHO05D002675 4.9e-08 64.7 155 29.7
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 4.9e-08 64.7 225 26.2
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 6.5e-08 64.3 155 29.0
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 8.4e-08 63.9 214 26.6
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 1.1e-07 63.5 155 29.0
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 1.4e-07 63.2 214 26.6
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 1.9e-07 62.8 116 31.9
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.9e-07 62.8 109 33.9
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 1.9e-07 62.8 137 29.9
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.2e-07 62.0 118 32.2
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 4.2e-07 61.6 63 49.2
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 5.5e-07 61.2 104 33.7
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 5.5e-07 61.2 127 27.6
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 9.3e-07 60.5 118 31.4
CBR_g22948 Chara braunii HOM05D002479 ORTHO05D002675 1.2e-06 60.1 138 24.6
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 1.2e-06 60.1 118 31.4
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.2e-06 60.1 118 31.4
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.2e-06 60.1 118 31.4
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 1.2e-06 60.1 101 33.7
Sed0011590 Sechium edule HOM05D002479 ORTHO05D002675 1.2e-06 60.1 137 29.2
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 1.6e-06 59.7 101 29.7
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 2.7e-06 58.9 127 27.6
Os03g0162900 Oryza sativa ssp. japonica HOM05D002479 ORTHO05D002675 2.7e-06 58.9 116 28.4
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 3.5e-06 58.5 94 29.8
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 3.5e-06 58.5 85 34.1
SMO364G0108 Selaginella moellendorffii HOM05D002479 ORTHO05D002675 4.6e-06 58.2 84 35.7
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 6.0e-06 57.8 85 32.9
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 6.0e-06 57.8 91 38.5
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 6.0e-06 57.8 91 37.4
TAR636G0077 Trochodendron aralioides HOM05D006877 ORTHO05D008735 6.0e-06 57.8 40 60.0
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 7.9e-06 57.4 136 26.5


User provided reference genes

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