Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1655.2 868 100.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1364.4 878 80.8
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1347.8 876 80.3
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1321.2 876 79.2
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1317.4 865 80.2
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1316.6 871 79.6
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1315.8 867 78.9
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1308.1 869 78.0
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1307.0 862 78.7
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1305.0 884 78.5
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1304.7 869 77.9
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1299.6 884 77.0
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1298.9 863 78.2
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1298.9 874 77.0
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1297.3 877 77.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1296.6 871 77.7
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1295.0 870 77.5
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1289.6 922 75.4
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1288.9 860 77.2
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1288.1 870 77.1
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1278.5 858 76.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1277.7 883 78.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1274.6 850 77.5
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1273.1 865 75.6
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1272.7 927 74.9
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1271.9 898 74.7
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1271.5 871 75.2
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1270.4 865 74.9
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 867 76.2
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1264.2 870 76.0
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 871 75.1
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1258.4 872 75.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1258.4 941 71.4
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1255.7 864 74.4
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1253.8 863 74.9
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1249.2 915 72.7
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 915 72.0
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1241.9 884 73.6
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1241.5 907 72.3
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1239.9 915 71.9
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1239.9 887 74.9
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1238.0 857 74.6
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1236.9 884 73.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1236.9 892 72.9
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 899 71.7
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1230.3 892 74.9
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1228.4 868 73.5
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 909 71.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 857 74.0
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 902 71.2
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 913 72.3
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1223.8 849 73.6
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 913 72.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 866 74.2
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1223.0 913 72.2
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 922 69.3
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 895 71.2
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1217.6 914 70.7
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1217.6 867 71.5
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 879 71.6
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 892 74.3
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 879 71.3
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1214.5 853 75.7
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 906 70.6
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 880 71.4
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 879 72.8
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1211.4 924 70.7
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 917 70.7
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 842 74.3
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1203.0 880 75.2
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 896 69.8
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 906 71.1
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 884 71.0
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 929 67.8
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 884 71.4
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 896 70.2
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 879 72.9
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1191.8 897 73.2
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1191.0 912 69.1
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 925 68.3
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 921 69.5
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 930 68.5
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 921 69.6
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 838 72.6
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 894 70.5
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1178.3 874 72.7
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 938 68.1
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1174.1 884 70.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1172.1 878 69.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1169.5 834 74.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 882 70.2
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1167.9 950 66.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1164.4 858 69.2
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1152.9 865 69.2
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1149.8 967 65.3
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 823 72.9
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1143.3 862 73.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 912 68.2
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1136.7 911 68.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1135.6 914 66.3
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 911 67.8
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1126.3 840 71.8
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1123.2 1003 60.2
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1115.5 868 68.3
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1110.5 855 68.8
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1107.4 763 73.8
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1100.1 853 66.6
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1091.3 822 69.0
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 4.2e-311 1071.2 856 65.4
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 2.8e-304 1048.5 869 64.3
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.8e-303 1045.8 858 63.2
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.7e-293 1012.7 901 62.6
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 7.2e-292 1007.3 875 64.9
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 6.3e-288 994.2 970 59.4
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 2.7e-283 978.8 734 69.2
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 3.0e-282 975.3 724 72.8
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.6e-275 953.0 731 68.4
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.4e-274 949.9 884 57.2
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.7e-272 941.8 696 71.0
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 6.1e-267 924.5 592 77.9
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.0e-266 921.8 917 56.1
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.5e-265 919.8 504 87.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.4e-258 896.7 848 58.7
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 7.3e-244 847.8 687 66.1
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.1e-191 674.5 643 58.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.2e-184 650.2 536 67.7
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.8e-178 630.6 384 77.9
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 6.5e-176 622.1 371 79.2
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 4.0e-173 612.8 352 83.0
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.8e-171 605.9 341 82.4
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.2e-167 593.2 360 77.8
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.5e-159 565.8 446 67.3
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.4e-156 556.6 550 61.1
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.2e-142 511.5 859 38.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 8.0e-142 508.8 695 44.5
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 6.6e-136 489.2 980 36.2
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.9e-127 461.1 305 75.1
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 3.8e-115 420.2 503 51.9
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.4e-109 401.7 297 67.0
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 7.6e-108 396.0 456 57.0
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.6e-102 378.3 1024 31.9
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 8.7e-96 355.9 574 42.3
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 7.4e-87 326.2 356 61.2
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 5.9e-76 290.0 165 83.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 8.0e-57 226.5 327 43.4
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 3.6e-49 201.1 152 78.9
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 2.8e-46 191.4 104 87.5
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.2e-39 169.5 107 78.5
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-36 159.5 107 68.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 5.2e-32 144.1 106 66.0
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 9.5e-26 123.2 86 74.4
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.6e-20 105.9 94 63.8
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-19 102.4 94 59.6
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.7e-19 102.4 77 67.5
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 2.1e-17 95.5 94 58.5
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.5e-15 89.4 105 60.0
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.2e-14 85.5 57 73.7
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.7e-14 84.7 45 88.9
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 6.6e-11 73.9 53 73.6
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 4.3e-10 71.2 53 66.0
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 9.5e-10 70.1 66 53.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 6.2e-09 67.4 52 65.4
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 5.2e-08 64.3 40 70.0
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.3e-06 59.7 47 66.0


User provided reference genes

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