Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 5.0e-151 537.7 270 100.0
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.3e-119 432.6 277 79.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 6.9e-116 421.0 277 77.3
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 6.9e-116 421.0 281 77.9
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 6.9e-116 421.0 280 78.6
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 2.6e-115 419.1 275 78.5
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.4e-115 418.7 281 77.9
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 5.8e-115 417.9 275 77.8
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 8.4e-114 414.1 265 80.4
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.4e-113 413.3 262 79.4
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 3.2e-113 412.1 274 77.0
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 4.2e-113 411.8 265 80.0
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 2.7e-112 409.1 272 77.6
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 3.5e-112 408.7 277 76.5
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 4.6e-112 408.3 270 78.5
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 7.8e-112 407.5 308 71.1
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 7.8e-112 407.5 312 68.3
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 3.0e-111 405.6 271 76.8
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 3.9e-111 405.2 270 78.5
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 5.1e-111 404.8 273 76.6
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 8.7e-111 404.1 272 76.1
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 8.7e-111 404.1 270 78.1
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 8.7e-111 404.1 251 81.7
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 2.5e-110 402.5 278 75.9
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 3.3e-110 402.1 275 76.7
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 3.3e-110 402.1 275 75.6
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 4.3e-110 401.7 275 74.9
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 7.3e-110 401.0 256 81.2
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.3e-109 400.2 261 78.9
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.6e-109 399.8 276 75.4
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.1e-109 399.4 272 76.8
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 2.1e-109 399.4 259 79.2
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 8.1e-109 397.5 272 75.7
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 3.1e-108 395.6 250 80.8
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 4.0e-108 395.2 257 79.4
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.0e-108 395.2 284 74.3
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 5.3e-108 394.8 283 74.6
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.3e-108 394.8 283 74.6
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 5.3e-108 394.8 273 74.4
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.2e-107 393.7 283 74.2
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.2e-107 393.7 283 74.2
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.2e-107 393.7 277 74.0
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 2.6e-107 392.5 272 75.4
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 7.6e-107 391.0 255 77.6
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.7e-106 389.8 276 75.7
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 2.2e-106 389.4 273 74.7
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 4.9e-106 388.3 271 74.9
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 6.4e-106 387.9 257 76.7
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 1.1e-105 387.1 264 75.4
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.4e-105 386.7 254 77.2
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 1.9e-105 386.3 269 75.1
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 5.4e-105 384.8 280 72.5
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 9.3e-105 384.0 261 74.3
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.2e-104 383.6 279 73.5
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.2e-104 383.6 286 71.7
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 2.1e-104 382.9 254 76.8
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 2.1e-104 382.9 259 76.1
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.7e-104 382.5 220 85.0
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 2.7e-104 382.5 266 74.1
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 6.0e-104 381.3 274 73.7
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 2.3e-103 379.4 262 74.0
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 3.9e-103 378.6 269 75.5
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 6.7e-103 377.9 255 77.3
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.5e-102 376.7 280 69.3
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.5e-102 375.9 279 73.5
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 3.3e-102 375.6 276 71.0
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 4.3e-102 375.2 272 72.4
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 9.6e-102 374.0 252 75.4
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 1.1e-100 370.5 250 74.8
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 3.1e-100 369.0 285 67.7
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 4.0e-100 368.6 277 69.3
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 6.9e-100 367.9 235 80.4
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 9.0e-100 367.5 271 69.7
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 1.2e-99 367.1 285 68.1
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 2.0e-99 366.3 262 72.5
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.6e-99 365.9 280 69.6
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 5.8e-99 364.8 285 67.4
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 7.6e-99 364.4 281 66.9
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 7.6e-99 364.4 285 67.7
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-98 363.6 282 67.7
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 1.3e-98 363.6 284 66.9
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.3e-98 363.6 213 83.1
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.7e-98 363.2 285 66.3
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 1.7e-98 363.2 283 67.5
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 2.2e-98 362.8 261 71.6
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 3.8e-98 362.1 284 66.5
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 3.8e-98 362.1 282 66.3
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 6.5e-98 361.3 309 64.4
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 8.4e-98 360.9 284 67.6
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.4e-97 360.1 285 66.0
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 1.4e-97 360.1 283 66.8
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.4e-97 360.1 285 66.0
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 7.1e-97 357.8 280 68.2
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 9.3e-97 357.5 285 65.6
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 9.3e-97 357.5 285 65.6
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 7.9e-96 354.4 263 70.7
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 6.7e-95 351.3 276 67.0
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 7.4e-94 347.8 252 72.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 8.2e-93 344.4 206 80.1
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 6.9e-92 341.3 254 70.1
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 7.6e-91 337.8 265 66.8
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 3.9e-87 325.5 263 64.3
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.5e-86 323.6 285 60.7
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.6e-85 320.1 259 66.0
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.6e-85 320.1 255 66.3
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 2.2e-85 319.7 262 61.5
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.1e-84 317.4 278 62.2
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 9.0e-84 314.3 226 74.3
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.1e-81 307.4 255 64.3
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 9.4e-73 277.7 231 62.8
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.1e-72 276.6 193 73.6
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 5.1e-71 271.9 289 54.0
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 3.3e-70 269.2 197 70.1
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 5.7e-70 268.5 195 69.2
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 6.5e-66 255.0 195 69.2
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 8.5e-66 254.6 179 72.6
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 5.7e-62 241.9 188 69.7
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 9.7e-62 241.1 195 65.6
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.8e-60 236.9 210 52.9
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 9.1e-60 234.6 265 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 3.2e-57 226.1 199 56.3
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.2e-50 203.4 276 50.4
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.3e-47 193.4 170 54.7
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 3.8e-42 176.0 207 44.9
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.6e-40 170.6 216 49.1
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 3.2e-36 156.4 276 33.7
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 5.2e-31 139.0 84 84.5
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.1e-28 131.3 80 83.8
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.0e-27 127.1 170 39.4
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 1.7e-26 124.0 267 30.7
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 7.5e-22 108.6 57 89.5
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.3e-21 107.8 54 94.4
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 4.6e-19 99.4 52 90.4
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 3.1e-07 60.1 173 28.3
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 4.0e-07 59.7 167 29.3
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.2e-06 58.2 180 27.2
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.2e-06 58.2 174 27.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.5e-06 57.8 181 27.6
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.5e-06 57.8 179 24.6
Glyma.07G142100 Glycine max HOM05D005750 ORTHO05D007126 2.0e-06 57.4 41 65.9
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.4e-06 56.6 177 26.6
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 9.9e-06 55.1 56 58.9
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 9.9e-06 55.1 184 26.6


User provided reference genes

Program Settings