Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 5.2e-145 517.7 261 100.0
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 5.7e-91 338.2 261 72.4
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 4.7e-53 212.2 213 57.3
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.0e-52 209.1 186 60.8
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 2.6e-51 206.5 193 58.5
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 3.4e-51 206.1 186 60.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 4.4e-51 205.7 186 60.2
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.6e-48 197.2 184 58.2
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.6e-48 197.2 184 58.2
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 2.0e-48 196.8 185 58.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.7e-48 196.4 152 66.4
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 4.5e-48 195.7 191 56.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.9e-48 195.3 184 57.6
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 7.7e-48 194.9 199 55.3
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.7e-48 194.9 157 64.3
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.0e-47 194.5 134 73.1
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-47 194.1 184 57.1
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-47 194.1 184 57.1
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.7e-47 193.7 174 57.5
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 6.5e-47 191.8 167 61.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 6.5e-47 191.8 159 60.4
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 8.5e-47 191.4 167 58.1
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 8.5e-47 191.4 162 63.0
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.1e-46 191.0 192 55.7
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 4.2e-46 189.1 145 67.6
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 5.5e-46 188.7 155 62.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.5e-46 188.7 158 62.0
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 7.2e-46 188.3 172 57.6
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 7.2e-46 188.3 155 65.8
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.2e-46 188.3 185 56.8
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 9.4e-46 188.0 155 65.8
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 9.4e-46 188.0 168 60.1
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.6e-45 187.2 224 50.0
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.6e-45 186.0 170 57.6
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.6e-45 186.0 185 56.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.7e-45 185.7 166 57.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.7e-45 185.7 166 57.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 8.0e-45 184.9 157 63.1
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 1.0e-44 184.5 170 58.2
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.0e-44 184.5 158 62.7
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.0e-44 184.5 168 58.3
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.4e-44 184.1 166 61.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.3e-44 183.3 176 56.8
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 3.0e-44 183.0 194 53.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 4.0e-44 182.6 276 43.8
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.0e-44 182.6 163 57.7
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 5.2e-44 182.2 168 60.1
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 5.2e-44 182.2 178 52.2
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.8e-44 181.8 184 54.9
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 8.8e-44 181.4 151 58.3
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.2e-43 181.0 306 42.8
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.2e-43 181.0 256 46.9
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.2e-43 181.0 156 62.2
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 1.2e-43 181.0 304 41.8
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.2e-43 181.0 155 63.9
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.2e-43 181.0 224 49.6
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 2.0e-43 180.3 256 46.9
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.0e-43 180.3 168 57.7
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.6e-43 179.9 178 51.7
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 3.4e-43 179.5 170 55.3
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.4e-43 179.5 154 58.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 4.4e-43 179.1 154 58.4
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 4.4e-43 179.1 170 55.9
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 4.4e-43 179.1 170 55.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 4.4e-43 179.1 161 61.5
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 5.7e-43 178.7 158 60.1
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 5.7e-43 178.7 155 60.0
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 7.5e-43 178.3 193 51.3
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 7.5e-43 178.3 299 40.8
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 7.5e-43 178.3 197 50.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 7.5e-43 178.3 299 40.8
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 7.5e-43 178.3 159 58.5
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 9.8e-43 177.9 307 40.7
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 9.8e-43 177.9 307 40.1
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.3e-42 177.6 157 58.6
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.3e-42 177.6 154 63.0
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-42 177.2 307 40.7
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 2.8e-42 176.4 309 39.5
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 3.7e-42 176.0 126 68.3
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.1e-41 172.9 126 67.5
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.0e-40 170.2 152 55.3
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.0e-40 170.2 121 69.4
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 2.7e-40 169.9 173 56.6
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 4.5e-40 169.1 199 50.3
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.3e-39 166.8 220 47.7
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.9e-39 166.4 130 62.3
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.9e-39 166.4 208 47.1
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 3.3e-38 162.9 234 42.7
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.3e-38 162.5 187 49.2
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.3e-38 162.5 155 54.8
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.3e-38 161.8 166 50.6
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.1e-37 160.2 155 54.2
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.8e-37 159.8 296 38.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 4.7e-37 159.1 167 49.7
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.0e-36 157.9 131 59.5
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 3.0e-36 156.4 252 41.7
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.0e-35 153.7 157 49.7
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.2e-33 146.4 168 49.4
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 7.8e-32 141.7 165 50.3
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 8.6e-31 138.3 116 61.2
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.9e-30 137.1 150 50.7
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 2.5e-30 136.7 110 63.6
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 4.0e-28 129.4 201 40.8
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.8e-28 128.6 157 42.7
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.8e-28 128.6 157 42.7
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 8.9e-28 128.3 102 63.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 4.4e-27 125.9 104 63.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.8e-27 125.6 132 51.5
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 9.8e-27 124.8 121 52.9
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 3.7e-26 122.9 192 39.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 4.6e-24 115.9 79 67.1
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.2e-21 107.8 93 61.3
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.8e-20 102.1 95 50.5
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.4e-17 94.4 96 57.3
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 4.1e-17 92.8 100 48.0
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.2e-13 81.3 164 37.2
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.1e-12 78.2 120 38.3
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 1.4e-12 77.8 69 52.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 3.4e-11 73.2 98 40.8
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.8e-11 72.4 65 56.9
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 1.7e-10 70.9 119 31.9
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 2.9e-10 70.1 101 43.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 6.4e-10 68.9 91 50.5
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 4.1e-09 66.2 46 63.0
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 2.1e-08 63.9 63 46.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.7e-08 63.5 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 3.5e-08 63.2 63 46.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 3.0e-07 60.1 120 35.8
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 2.5e-06 57.0 164 30.5
PSO832G3634 Papaver somniferum HOM05D000964 ORTHO05D003870 7.3e-06 55.5 119 33.6


User provided reference genes

Program Settings