Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 7.3e-184 647.1 336 100.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 4.0e-182 641.3 335 99.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.6e-141 505.8 336 80.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 6.5e-124 448.0 344 71.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.2e-122 443.7 345 71.0
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 6.1e-122 441.4 341 71.3
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.3e-121 439.5 341 71.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.8e-118 429.9 348 67.5
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 5.0e-116 421.8 348 67.0
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.5e-115 419.5 348 66.7
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 8.0e-114 414.5 338 69.8
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.0e-113 414.1 339 67.3
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.8e-113 411.0 339 66.4
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 8.8e-113 411.0 340 68.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.2e-112 410.6 339 67.6
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.6e-112 409.5 343 66.8
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 7.5e-112 407.9 326 69.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.8e-111 406.0 339 66.7
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.1e-110 404.1 336 68.5
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.1e-110 402.5 340 67.6
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.1e-110 402.5 349 65.0
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.0e-109 399.8 338 66.0
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 4.5e-109 398.7 341 68.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 7.7e-109 397.9 340 66.5
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.9e-108 396.0 340 65.0
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.9e-108 396.0 348 67.2
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.0e-108 395.2 333 65.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.5e-107 392.9 336 67.3
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 5.5e-107 391.7 340 67.1
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 5.5e-107 391.7 339 64.6
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-106 390.2 339 64.3
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.8e-106 389.4 348 66.4
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.0e-105 386.0 339 64.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.0e-105 386.0 340 64.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 4.0e-105 385.6 339 65.2
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.2e-105 385.2 340 63.8
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-104 383.6 340 63.8
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.6e-104 382.9 346 64.5
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.4e-104 382.5 340 65.9
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 3.4e-104 382.5 339 64.0
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.4e-104 382.1 341 63.6
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 5.7e-104 381.7 339 62.5
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 9.8e-104 380.9 341 64.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.3e-103 380.6 338 64.8
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.7e-103 380.2 337 64.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.7e-103 380.2 341 64.8
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.2e-103 379.8 341 64.8
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.2e-103 379.8 352 62.8
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.7e-103 379.0 341 63.3
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 4.9e-103 378.6 338 63.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 4.9e-103 378.6 338 63.9
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 4.9e-103 378.6 340 65.9
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 6.3e-103 378.3 340 63.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 8.3e-103 377.9 340 64.7
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.4e-102 377.1 338 64.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.4e-102 377.1 341 66.0
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.8e-102 376.7 340 64.4
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.4e-102 376.3 340 64.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 3.1e-102 375.9 347 63.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 3.1e-102 375.9 339 65.8
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 5.4e-102 375.2 340 64.4
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-101 374.0 325 64.0
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.6e-101 373.6 341 63.9
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.0e-101 373.2 341 63.3
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 7.8e-101 371.3 340 63.8
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.0e-100 370.9 341 65.1
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.3e-100 369.8 338 64.2
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 2.9e-100 369.4 342 63.5
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.9e-100 369.0 348 63.8
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 5.0e-100 368.6 338 63.0
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 6.6e-100 368.2 342 62.6
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.1e-99 367.5 341 66.0
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.1e-99 367.5 361 61.5
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-99 367.1 340 64.4
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.9e-99 366.7 338 65.1
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 3.3e-99 365.9 339 63.4
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 5.6e-99 365.2 338 63.9
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 7.3e-99 364.8 340 64.1
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 7.3e-99 364.8 352 62.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 9.5e-99 364.4 340 64.1
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.2e-98 364.0 318 65.4
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.2e-98 364.0 338 63.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.8e-98 362.8 336 61.6
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.6e-98 362.5 340 63.5
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.7e-98 362.1 347 61.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.7e-98 362.1 338 62.7
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.4e-97 360.5 349 61.0
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 5.2e-97 358.6 345 62.0
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 5.2e-97 358.6 345 62.0
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 5.2e-97 358.6 342 59.9
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.0e-96 356.7 336 61.6
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.4e-96 355.5 341 63.9
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.5e-96 354.8 339 63.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.9e-95 352.8 339 62.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 8.3e-95 351.3 341 59.2
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.1e-94 350.9 336 59.5
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.4e-94 350.5 340 61.2
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.4e-94 350.5 338 62.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 3.5e-93 345.9 342 60.8
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 7.8e-93 344.7 338 61.2
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 7.8e-93 344.7 342 60.2
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.0e-92 342.8 348 59.2
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 3.9e-92 342.4 328 61.9
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 5.0e-92 342.0 340 58.8
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 5.0e-92 342.0 339 59.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 8.6e-92 341.3 329 60.8
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.9e-91 340.1 353 58.6
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 3.3e-91 339.3 338 59.2
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.6e-91 338.6 340 59.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.5e-91 337.8 337 59.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.8e-90 336.3 341 60.1
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 8.9e-89 331.3 353 56.4
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.5e-88 330.5 339 57.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.6e-88 329.7 339 59.3
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.7e-87 325.9 262 67.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.4e-87 325.1 341 58.9
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 4.3e-83 312.4 293 59.0
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 8.1e-82 308.1 349 55.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 7.5e-80 301.6 342 54.4
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.4e-78 296.6 340 52.9
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 9.2e-78 294.7 350 54.9
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.7e-76 290.4 349 54.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 3.9e-76 289.3 339 54.0
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 4.0e-73 279.3 349 51.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.8e-66 255.8 247 60.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 4.2e-62 242.7 290 51.4
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.2e-61 241.1 318 49.1
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.3e-60 237.7 286 51.4
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 9.6e-59 231.5 352 45.7
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.4e-57 227.6 348 44.5
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.3e-57 225.7 351 43.9
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-54 218.0 334 46.4
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 2.0e-48 197.2 281 48.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 2.0e-48 197.2 281 48.8
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.9e-46 190.7 189 59.8
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.9e-43 180.6 251 49.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-41 174.5 172 56.4
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.4e-40 169.9 312 41.7
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.3e-39 167.9 131 69.5
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 5.0e-39 166.0 148 66.9
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 8.7e-36 155.2 200 49.5
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.8e-34 150.2 347 35.2
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 8.2e-34 148.7 336 36.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 9.0e-33 145.2 366 33.3
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.5e-32 142.9 154 56.5
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.0e-31 141.7 349 38.4
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.5e-30 137.1 103 67.0
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 5.7e-27 125.9 302 31.8
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.4e-27 125.6 339 31.6
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 9.1e-25 118.6 109 60.6
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 6.5e-23 112.5 114 59.6
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 4.2e-14 83.2 119 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.6e-13 81.3 237 28.3


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