Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 7.2e-189 663.7 318 100.0
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 2.7e-156 555.4 310 83.2
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 8.6e-134 480.7 312 71.8
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 4.3e-133 478.4 314 70.7
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.4e-131 473.4 310 71.6
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 1.2e-130 470.3 310 71.6
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 5.8e-130 468.0 316 67.4
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 9.8e-130 467.2 307 68.7
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.7e-129 466.5 310 70.0
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 2.9e-129 465.7 314 70.4
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 2.9e-129 465.7 310 70.0
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 5.4e-128 461.5 310 69.7
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.2e-127 460.3 316 65.5
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 2.0e-127 459.5 316 65.8
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 3.5e-127 458.8 315 67.6
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 6.0e-127 458.0 316 65.5
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.3e-125 452.2 316 64.2
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.3e-125 451.8 310 66.8
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 5.6e-125 451.4 298 66.4
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 7.3e-125 451.1 308 68.2
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 4.7e-124 448.4 308 67.5
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 1.4e-123 446.8 317 65.0
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 3.1e-123 445.7 314 65.9
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 6.8e-123 444.5 308 67.9
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 5.8e-122 441.4 308 66.9
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.7e-121 439.9 314 64.3
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 2.2e-121 439.5 298 67.8
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.9e-121 439.1 314 65.0
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.4e-120 436.8 308 66.2
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 9.2e-120 434.1 311 65.9
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 9.2e-120 434.1 313 64.2
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.2e-119 433.7 314 66.6
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 2.7e-119 432.6 316 64.2
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 4.6e-119 431.8 310 64.2
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 1.3e-118 430.3 310 64.8
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 3.0e-118 429.1 308 64.9
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 5.1e-118 428.3 308 66.2
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.5e-117 426.8 314 66.6
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.5e-117 426.0 311 65.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 5.6e-117 424.9 316 63.0
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 7.3e-117 424.5 296 65.9
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 7.3e-117 424.5 312 62.5
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 7.3e-117 424.5 307 62.9
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 9.5e-117 424.1 310 64.2
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.2e-116 423.7 308 66.2
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 1.4e-115 420.2 310 63.5
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.4e-115 420.2 310 63.5
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 3.1e-115 419.1 311 63.3
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 6.8e-115 417.9 314 62.1
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.2e-114 417.2 276 69.2
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.2e-114 417.2 311 63.7
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 2.0e-114 416.4 314 62.7
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 4.4e-114 415.2 311 61.4
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 5.8e-114 414.8 314 61.8
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 9.9e-114 414.1 310 63.5
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.7e-113 413.3 311 62.4
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.2e-113 412.9 308 63.0
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 2.2e-113 412.9 311 62.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 2.2e-113 412.9 311 62.4
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.2e-113 412.9 308 61.4
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 2.9e-113 412.5 311 62.1
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 8.4e-113 411.0 308 61.7
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.9e-112 409.8 311 62.7
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 3.2e-112 409.1 305 63.0
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 3.2e-112 409.1 308 61.7
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 5.1e-110 401.7 311 61.1
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 5.1e-110 401.7 311 61.4
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 6.6e-110 401.4 303 60.4
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 8.7e-110 401.0 308 61.4
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.9e-109 399.8 308 62.3
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 4.3e-109 398.7 311 60.5
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 4.3e-109 398.7 312 61.2
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 5.6e-109 398.3 311 60.1
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 6.2e-108 394.8 250 73.6
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.8e-107 393.3 299 58.9
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.4e-107 392.9 308 58.4
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 2.4e-107 392.9 309 57.9
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 5.2e-107 391.7 311 58.8
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 6.9e-107 391.3 311 60.8
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 1.5e-106 390.2 303 60.7
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 2.6e-106 389.4 308 59.4
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 5.8e-106 388.3 311 59.5
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.2e-105 386.3 313 59.4
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 4.9e-105 385.2 291 61.5
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-104 384.0 308 59.1
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 1.9e-104 383.3 261 67.4
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 7.1e-104 381.3 304 58.9
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 9.3e-104 380.9 304 58.6
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 9.3e-104 380.9 309 57.9
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.2e-103 380.6 296 59.5
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 3.5e-103 379.0 304 58.2
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 1.7e-102 376.7 310 54.8
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 8.7e-102 374.4 304 57.9
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.7e-102 374.4 308 57.5
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.5e-101 373.6 313 57.2
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 4.3e-101 372.1 308 55.8
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.6e-100 370.2 310 55.8
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 6.2e-100 368.2 314 55.4
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 4.0e-99 365.5 307 56.7
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 6.9e-99 364.8 310 56.8
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-98 363.6 308 56.5
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 3.4e-98 362.5 300 56.3
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 3.4e-98 362.5 321 54.2
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 4.5e-98 362.1 321 54.2
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 6.4e-97 358.2 309 57.3
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 7.1e-96 354.8 295 55.6
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 7.1e-96 354.8 318 53.8
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 7.1e-96 354.8 308 57.8
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 9.3e-96 354.4 310 53.2
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 9.3e-96 354.4 309 56.6
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.1e-95 353.2 295 57.6
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 7.9e-95 351.3 298 56.0
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 1.8e-94 350.1 298 56.0
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 5.1e-94 348.6 308 54.2
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.3e-92 344.0 308 54.5
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.1e-92 343.2 302 54.6
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 2.8e-92 342.8 308 52.9
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.4e-91 340.5 302 54.3
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 2.4e-91 339.7 307 54.4
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 3.1e-91 339.3 308 53.9
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 9.0e-91 337.8 302 54.0
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 9.0e-91 337.8 309 51.8
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 4.5e-90 335.5 311 53.1
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 1.4e-88 330.5 311 52.4
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 1.4e-88 330.5 311 52.4
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.9e-88 330.1 243 64.6
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 3.2e-88 329.3 310 51.0
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 4.2e-88 328.9 298 52.7
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.3e-86 323.9 237 61.6
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 9.6e-85 317.8 309 49.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 9.6e-85 317.8 309 49.5
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 6.2e-84 315.1 240 60.4
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.5e-82 310.5 314 47.5
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 2.0e-82 310.1 308 48.7
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 2.0e-82 310.1 308 48.7
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 4.5e-82 308.9 308 49.0
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.7e-81 307.0 291 52.2
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 1.4e-80 303.9 307 49.2
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.5e-80 303.1 236 58.5
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.2e-72 276.2 297 44.8
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.0e-69 266.9 302 41.4
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.6e-63 247.3 287 42.5
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 1.0e-62 244.6 236 49.6
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.0e-62 244.6 311 39.2
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.0e-61 240.4 279 42.7
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 5.7e-61 238.8 266 39.8
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.8e-60 236.5 279 42.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 8.2e-60 235.0 264 44.3
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.4e-59 234.2 279 42.3
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.3e-57 227.6 180 58.3
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.2e-56 223.0 265 40.0
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 8.0e-55 218.4 200 51.0
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.4e-54 217.6 267 39.7
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 2.3e-54 216.9 302 36.1
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 5.2e-54 215.7 269 39.8
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 6.7e-54 215.3 190 51.6
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.5e-48 195.7 166 51.2
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.7e-47 193.4 268 35.8
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.7e-47 193.4 268 35.8
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.2e-45 188.0 129 66.7
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.0e-45 187.2 132 68.9
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.5e-42 176.0 148 55.4
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.6e-39 167.5 118 69.5
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.4e-35 153.7 155 48.4
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 5.4e-35 152.5 124 59.7
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.7e-28 131.0 82 70.7
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 1.8e-27 127.5 89 62.9
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 4.1e-27 126.3 87 62.1
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.2e-26 124.8 164 37.8
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.1e-24 118.2 225 30.7
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 1.2e-21 108.2 190 29.5
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.2e-18 98.2 62 67.7
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.0e-18 97.4 105 43.8
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 3.0e-17 93.6 76 57.9
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.6e-10 69.7 101 40.6


User provided reference genes

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