Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 0.0e+00 1220.7 610 100.0
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 5.5e-230 801.2 614 67.6
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 5.0e-207 724.9 610 62.6
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 1.1e-206 723.8 610 62.0
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 7.2e-206 721.1 601 64.1
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 5.2e-204 714.9 611 60.4
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.6e-203 712.6 611 61.5
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 5.9e-200 701.4 609 62.1
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 5.9e-200 701.4 606 60.7
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 2.5e-198 696.0 602 61.8
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.6e-197 692.2 602 61.3
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 8.3e-194 681.0 609 59.9
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 3.5e-192 675.6 607 59.8
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 6.0e-192 674.9 608 57.6
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 1.0e-191 674.1 610 58.9
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.9e-186 656.0 609 58.3
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.9e-185 653.3 533 64.0
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.2e-184 650.6 591 57.7
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.6e-184 650.2 613 56.9
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 1.9e-182 643.3 591 57.0
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 2.6e-171 606.3 680 51.0
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 3.4e-171 605.9 593 53.5
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 9.9e-171 604.4 669 51.9
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 2.4e-169 599.7 614 52.0
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 4.3e-166 589.0 587 53.3
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 1.6e-165 587.0 610 52.8
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 4.0e-164 582.4 607 53.2
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.0e-164 582.4 607 53.2
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 2.6e-163 579.7 607 52.1
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 5.8e-163 578.6 587 56.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 7.6e-163 578.2 613 50.6
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 9.9e-163 577.8 607 52.1
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.3e-162 577.4 607 50.7
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.7e-162 577.0 610 53.0
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 6.4e-162 575.1 613 50.1
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 8.4e-162 574.7 612 50.8
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 1.9e-161 573.5 612 50.3
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 3.2e-161 572.8 591 51.3
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 1.2e-160 570.9 654 50.0
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.6e-160 570.5 607 51.7
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 6.0e-160 568.5 613 50.1
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.3e-159 567.4 617 52.4
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 6.6e-159 565.1 607 48.4
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.9e-158 563.5 614 49.5
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 2.5e-158 563.1 614 49.5
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 2.5e-158 563.1 601 51.1
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 3.3e-158 562.8 684 48.0
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 3.3e-158 562.8 608 50.7
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 9.6e-158 561.2 654 49.5
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 6.9e-156 555.1 601 50.4
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 5.8e-155 552.0 609 50.4
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 2.2e-154 550.1 591 49.6
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 2.9e-154 549.7 614 48.5
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 4.9e-154 548.9 581 50.1
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 6.4e-154 548.5 654 46.3
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 1.4e-153 547.4 619 48.9
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 2.7e-152 543.1 592 48.3
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 7.9e-152 541.6 352 76.4
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.5e-150 537.3 615 48.9
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.9e-150 537.0 662 45.9
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.3e-150 535.8 607 51.4
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 5.6e-150 535.4 613 49.9
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 2.1e-149 533.5 614 49.7
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 2.1e-149 533.5 544 53.5
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.0e-146 524.6 593 49.9
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 1.4e-145 520.8 593 48.9
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.2e-145 519.2 587 49.9
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 7.1e-145 518.5 609 49.8
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 9.3e-145 518.1 613 46.0
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 1.6e-144 517.3 613 48.5
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 4.6e-144 515.8 598 47.3
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 4.6e-144 515.8 618 46.4
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.8e-143 513.8 399 67.2
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 3.0e-143 513.1 609 47.6
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 2.1e-141 506.9 601 48.1
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 2.8e-141 506.5 582 48.5
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 2.0e-139 500.4 593 48.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 4.5e-139 499.2 504 51.8
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 7.6e-139 498.4 513 50.3
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 1.0e-138 498.0 582 48.5
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 1.7e-138 497.3 491 53.4
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 6.5e-138 495.4 586 48.0
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.9e-137 493.8 586 48.6
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 7.9e-136 488.4 451 57.2
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 4.2e-129 466.1 451 55.2
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 3.3e-126 456.4 611 40.9
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 4.8e-125 452.6 595 43.9
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 6.3e-125 452.2 609 42.9
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 3.4e-123 446.4 586 42.5
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.4e-121 441.0 611 42.7
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.0e-119 434.9 412 54.9
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.2e-117 427.2 359 63.5
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.8e-116 424.1 562 43.8
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 8.0e-112 408.7 345 62.0
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 2.5e-105 387.1 348 57.8
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 4.7e-104 382.9 437 49.9
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.3e-98 364.8 358 53.4
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.8e-98 363.2 288 64.9
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.7e-91 340.5 549 37.9
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 8.6e-90 335.5 247 70.4
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 3.6e-88 330.1 509 41.7
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.4e-76 291.6 245 60.4
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 1.4e-76 291.6 239 62.8
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 5.4e-68 263.1 558 31.4
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 8.6e-66 255.8 276 50.7
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 2.3e-63 247.7 477 33.8
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 9.9e-62 242.3 654 29.2
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.2e-61 241.1 270 50.0
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 3.4e-46 190.7 536 28.5
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.1e-41 175.6 399 29.1
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 8.1e-40 169.5 199 46.7
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.4e-36 158.7 235 39.6
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 9.3e-28 129.4 98 68.4
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.9e-25 121.7 187 40.6
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 1.9e-25 121.7 216 37.0
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 1.6e-24 118.6 184 41.8
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 4.8e-24 117.1 146 45.9
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 9.7e-17 92.8 178 34.8
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 3.1e-15 87.8 167 37.7
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 7.9e-11 73.2 179 29.1
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.0e-09 68.6 58 55.2
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 5.7e-09 67.0 64 53.1
Rhsim03G0224400 Rhododendron simsii HOM05D005820 ORTHO05D007116 1.8e-07 62.0 108 44.4
MCO08G313 Micromonas commoda HOM05D005820 ORTHO05D007116 6.9e-07 60.1 133 29.3


User provided reference genes

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