Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 1.4e-75 286.2 145 100.0
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 9.4e-11 70.9 37 81.1
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.6e-10 70.1 60 58.3
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.8e-09 66.6 37 75.7
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.3e-09 66.2 37 78.4
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.3e-09 66.2 37 75.7
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.3e-09 66.2 39 71.8
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 3.9e-09 65.5 42 64.3
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 3.9e-09 65.5 42 64.3
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 3.9e-09 65.5 37 73.0
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 5.1e-09 65.1 37 73.0
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 6.7e-09 64.7 37 73.0
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 6.7e-09 64.7 37 73.0
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 6.7e-09 64.7 37 75.7
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.7e-09 64.7 36 75.0
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.7e-09 64.7 37 70.3
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 6.7e-09 64.7 37 70.3
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 8.8e-09 64.3 37 70.3
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.8e-09 64.3 37 70.3
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.1e-08 63.9 36 75.0
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 1.1e-08 63.9 37 70.3
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.1e-08 63.9 37 67.6
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.5e-08 63.5 37 73.0
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.5e-08 63.5 37 70.3
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.5e-08 63.5 37 67.6
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.5e-08 63.5 37 67.6
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.0e-08 63.2 37 70.3
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.0e-08 63.2 37 70.3
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 2.0e-08 63.2 37 67.6
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 2.0e-08 63.2 37 70.3
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.5e-08 62.8 37 73.0
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.5e-08 62.8 100 39.0
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 2.5e-08 62.8 37 70.3
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 2.5e-08 62.8 37 67.6
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.5e-08 62.8 37 70.3
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 3.3e-08 62.4 34 73.5
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 3.3e-08 62.4 37 70.3
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 3.3e-08 62.4 37 70.3
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 4.3e-08 62.0 37 70.3
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 5.7e-08 61.6 37 67.6
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 5.7e-08 61.6 36 72.2
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 7.4e-08 61.2 37 67.6
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 7.4e-08 61.2 37 67.6
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.3e-07 60.5 37 64.9
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.3e-07 60.5 37 70.3
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.3e-07 60.5 37 70.3
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.3e-07 60.5 37 70.3
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-07 60.5 37 67.6
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 1.3e-07 60.5 37 64.9
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.7e-07 60.1 37 67.6
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-07 60.1 36 75.0
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.7e-07 60.1 37 70.3
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 2.2e-07 59.7 42 59.5
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 2.2e-07 59.7 33 78.8
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 2.8e-07 59.3 37 70.3
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.7e-07 58.9 37 67.6
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 3.7e-07 58.9 37 62.2
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 3.7e-07 58.9 37 62.2
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 3.7e-07 58.9 37 67.6
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 3.7e-07 58.9 34 67.6
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 4.8e-07 58.5 41 61.0
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 4.8e-07 58.5 37 64.9
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.8e-07 58.5 37 64.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 6.3e-07 58.2 34 70.6
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 8.2e-07 57.8 37 64.9
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 8.2e-07 57.8 37 67.6
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 8.2e-07 57.8 34 64.7
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 8.2e-07 57.8 36 69.4
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 8.2e-07 57.8 37 73.0
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.1e-06 57.4 36 63.9
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.1e-06 57.4 37 67.6
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-06 57.4 40 62.5
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-06 57.4 34 73.5
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.1e-06 57.4 35 68.6
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.4e-06 57.0 37 64.9
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.4e-06 57.0 34 64.7
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.4e-06 57.0 36 63.9
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.4e-06 57.0 37 67.6
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-06 57.0 37 62.2
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.4e-06 57.0 37 62.2
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.4e-06 57.0 39 66.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.8e-06 56.6 34 64.7
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 1.8e-06 56.6 40 65.0
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-06 56.2 31 77.4
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-06 56.2 31 77.4
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.4e-06 56.2 33 69.7
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 2.4e-06 56.2 100 38.0
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 2.4e-06 56.2 37 64.9
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 3.1e-06 55.8 41 58.5
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 3.1e-06 55.8 34 73.5
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 4.1e-06 55.5 36 61.1
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 5.3e-06 55.1 34 67.6
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 6.9e-06 54.7 34 64.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 6.9e-06 54.7 37 67.6
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 6.9e-06 54.7 34 67.6
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 6.9e-06 54.7 37 62.2
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 9.1e-06 54.3 41 56.1
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 9.1e-06 54.3 81 44.4


User provided reference genes

Program Settings