Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.1e-280 968.4 484 100.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.5e-246 855.9 482 87.3
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.1e-244 848.2 484 84.7
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.6e-238 828.6 484 82.9
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 9.4e-233 810.1 483 80.7
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.3e-231 805.4 484 80.8
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 4.4e-230 801.2 484 80.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 9.7e-230 800.0 484 80.0
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.7e-229 798.1 484 78.9
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 8.2e-229 797.0 486 79.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.1e-228 796.6 486 79.8
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.8e-228 795.8 486 79.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.6e-227 792.7 490 79.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 6.5e-226 787.3 481 79.2
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 4.7e-224 781.2 485 78.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-223 779.6 483 77.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.0e-223 778.5 484 78.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 9.1e-220 766.9 478 77.6
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.2e-219 766.5 483 77.0
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.0e-218 763.5 478 78.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 5.0e-218 761.1 484 77.5
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.5e-218 760.8 475 77.1
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.6e-216 755.0 475 76.4
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.7e-216 754.6 475 75.8
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.0e-215 751.9 481 76.1
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.0e-215 751.9 477 75.5
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.5e-214 749.6 475 76.2
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.5e-214 749.6 483 75.8
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 3.4e-214 748.4 483 74.9
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 5.7e-214 747.7 475 74.7
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 6.3e-213 744.2 483 75.2
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 8.3e-213 743.8 483 74.9
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-212 743.4 483 74.9
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.4e-212 743.0 484 74.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.7e-211 738.8 476 74.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.5e-211 738.4 504 73.0
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.3e-210 735.7 481 74.4
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.3e-210 735.7 484 74.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 3.8e-210 734.9 486 75.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 5.0e-210 734.6 484 73.1
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-209 733.4 475 73.5
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.5e-209 733.0 478 73.6
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.3e-209 731.9 473 73.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.3e-209 731.9 484 73.8
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 5.6e-209 731.1 479 72.9
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 9.5e-209 730.3 497 73.2
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.2e-208 729.9 475 73.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.2e-208 729.9 483 72.9
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 4.7e-208 728.0 475 72.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 4.7e-208 728.0 475 72.8
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 6.1e-208 727.6 475 73.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 8.0e-208 727.2 475 73.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.0e-207 726.9 506 70.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-207 726.1 475 73.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.3e-207 725.7 476 73.9
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 5.2e-207 724.5 478 73.2
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 6.8e-207 724.2 493 68.6
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 8.9e-207 723.8 475 72.4
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.2e-206 723.4 475 74.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.2e-206 723.4 471 71.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.5e-206 723.0 499 71.7
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-206 722.6 483 74.5
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.6e-206 722.2 475 72.2
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 5.7e-206 721.1 504 70.8
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 9.8e-206 720.3 473 72.3
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.3e-205 719.9 483 73.1
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.2e-205 719.2 506 69.4
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.9e-205 718.8 475 73.5
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.3e-205 717.2 476 74.8
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.3e-205 717.2 474 72.4
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.8e-204 716.1 504 70.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 4.1e-204 714.9 469 71.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.4e-204 714.5 496 72.4
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.0e-204 714.1 483 73.3
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.0e-204 714.1 483 73.3
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.2e-203 713.4 492 73.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.7e-203 712.2 497 71.8
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.5e-203 711.8 466 72.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.3e-202 709.9 471 73.2
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.7e-202 709.5 475 71.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.3e-202 709.1 475 71.8
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 2.3e-202 709.1 459 76.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.9e-202 708.4 482 73.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 5.0e-202 708.0 478 72.2
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-201 706.8 484 71.3
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.3e-201 704.9 484 72.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 6.2e-200 701.0 518 66.2
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.4e-199 699.9 477 73.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.8e-199 699.5 481 71.3
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.8e-199 699.5 545 65.5
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.6e-198 695.7 487 69.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-197 693.0 476 67.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.9e-197 691.4 465 71.0
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.1e-196 690.3 482 70.7
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 3.2e-196 688.7 473 72.3
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.3e-194 683.3 499 65.1
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.3e-194 682.6 473 68.5
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 6.6e-194 681.0 476 70.0
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.1e-193 680.2 491 68.4
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.5e-193 679.9 474 67.1
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.9e-193 679.5 471 67.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-193 679.5 474 67.3
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.3e-193 678.7 462 71.2
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.6e-193 677.9 473 67.0
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.6e-192 675.2 462 71.2
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.7e-192 674.9 483 69.6
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.7e-189 666.4 615 57.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.7e-187 659.1 474 68.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.6e-187 658.3 459 68.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 6.0e-187 657.9 485 70.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 9.9e-182 640.6 473 65.3
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.7e-181 639.8 482 65.1
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.5e-179 632.1 536 61.4
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.2e-175 618.2 463 64.4
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.5e-169 600.1 363 79.3
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.3e-169 599.0 366 79.2
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.3e-169 598.6 477 65.6
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.4e-159 567.0 483 59.8
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.8e-157 558.9 391 68.8
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.7e-155 552.7 484 61.0
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 3.7e-152 542.3 462 58.2
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.1e-148 528.1 490 56.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 9.3e-148 527.7 362 71.3
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.9e-146 522.3 470 54.7
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.2e-144 516.5 469 55.9
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.1e-143 514.2 326 77.9
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.1e-143 512.3 361 72.3
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.4e-140 501.1 381 67.5
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.1e-135 486.1 330 72.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.6e-129 466.5 289 75.8
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.5e-118 429.1 292 73.6
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.5e-110 402.5 482 46.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-109 400.2 281 69.8
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 5.2e-106 389.0 243 74.9
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 9.8e-105 384.8 475 45.7
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.0e-98 362.8 232 76.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 4.4e-97 359.4 235 75.7
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.2e-96 357.1 215 75.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.4e-95 354.4 219 74.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-93 348.2 241 73.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.1e-92 344.7 212 75.5
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.1e-92 344.7 240 68.8
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 4.3e-92 342.8 259 66.4
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 9.5e-92 341.7 453 42.6
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.3e-85 320.5 204 72.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.1e-79 301.6 181 82.9
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 7.8e-78 295.4 187 80.2
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.8e-75 287.0 274 51.8
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 7.5e-73 278.9 472 35.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.4e-65 253.4 274 52.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.6e-62 244.6 498 33.5
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.7e-59 233.0 184 69.0
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.6e-57 225.7 147 76.2
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 6.0e-54 216.1 161 64.0
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.6e-52 209.5 285 46.0
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.2e-46 191.8 114 77.2
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 9.6e-44 182.2 124 66.9
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.8e-43 180.6 125 62.4
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.9e-40 169.9 137 59.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 4.0e-34 150.2 153 51.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 9.0e-34 149.1 94 71.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.0e-34 149.1 315 36.5
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 6.5e-32 142.9 315 34.9
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.5e-31 141.0 80 86.2
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.2e-31 140.6 77 87.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 2.1e-30 137.9 85 76.5
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-28 132.1 150 51.3
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 7.4e-28 129.4 81 71.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 9.7e-28 129.0 76 76.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.4e-26 124.4 102 63.7
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.9e-23 114.8 64 81.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.1e-22 109.8 63 81.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 5.1e-21 106.7 102 52.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 5.1e-21 106.7 84 58.3
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.4e-20 102.8 90 58.9
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.4e-18 97.8 80 61.2
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 6.9e-18 96.3 65 66.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.2e-17 95.5 78 52.6
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.2e-16 91.3 55 72.7
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.8e-16 90.5 64 62.5
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 6.1e-14 83.2 51 72.5
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.0e-13 82.4 164 36.6
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.3e-11 75.5 112 42.0
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-10 72.4 48 70.8
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 2.6e-09 67.8 44 68.2
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 2.5e-07 61.2 37 70.3
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.2e-07 60.8 155 31.6


User provided reference genes

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