Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 2057.7 974 100.0
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1798.9 974 85.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1771.5 974 83.7
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1750.3 973 82.9
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1731.1 976 81.9
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1731.1 976 82.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1730.3 972 81.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1727.6 975 81.9
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1726.8 974 81.0
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1726.1 975 82.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1725.7 988 81.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1718.0 974 81.4
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1714.5 975 81.3
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1709.5 958 82.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1708.7 977 80.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1702.6 974 81.7
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1699.1 974 82.0
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1690.2 977 79.8
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1677.1 966 79.5
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1672.1 977 80.2
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1671.8 974 79.5
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1665.6 974 78.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1661.7 975 79.6
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1661.7 978 79.1
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1661.0 973 78.6
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1653.3 978 79.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1650.2 970 79.1
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1646.3 971 78.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 971 78.6
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1642.9 968 79.1
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1640.9 973 78.8
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1639.0 979 79.0
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1634.0 976 76.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1634.0 970 78.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1633.6 964 78.5
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1629.4 973 77.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1626.3 977 77.5
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1623.6 983 77.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1620.9 952 79.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1619.4 966 78.5
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 964 78.5
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1618.6 971 77.7
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 971 77.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 967 77.6
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 975 77.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 964 78.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1609.3 969 77.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1608.6 973 76.9
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 964 77.3
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 965 77.2
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 968 77.5
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1602.8 966 77.6
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1602.8 971 76.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1602.4 973 76.2
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1598.9 968 77.2
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1598.6 973 76.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1598.2 965 76.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1594.7 975 76.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1592.0 925 79.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1591.6 964 76.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 972 76.9
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 975 76.2
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 975 76.2
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 966 76.0
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1585.1 972 76.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1584.7 974 75.6
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1578.1 967 75.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1575.1 962 75.3
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 967 75.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1573.1 970 75.2
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1569.7 942 77.5
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 982 74.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 975 74.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 968 75.6
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1567.0 986 73.4
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1564.3 976 75.8
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 969 75.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 996 74.2
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 971 75.3
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1557.0 971 74.3
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 981 73.5
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 968 75.0
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 976 74.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 978 74.2
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 972 74.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 959 75.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1537.7 978 73.9
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 974 72.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1523.1 978 71.6
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 890 78.7
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 978 72.5
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1513.4 978 71.5
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1512.7 980 73.4
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1507.3 871 78.8
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 969 72.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 979 72.1
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 977 71.3
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1492.6 971 71.4
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1491.5 850 80.1
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 984 71.4
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1484.5 980 72.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 979 71.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1478.8 979 71.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1476.1 979 70.8
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1471.8 973 70.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1469.5 979 70.7
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1468.8 980 70.8
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1468.8 980 70.8
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1466.4 845 78.7
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1458.4 985 69.3
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 976 70.6
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1456.8 976 70.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1453.0 976 70.5
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 976 70.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1443.7 979 70.9
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1439.5 1003 67.6
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1437.6 980 69.8
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1379.8 978 66.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1370.9 975 67.5
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1360.5 761 80.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1352.0 980 67.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1333.2 769 79.3
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1325.1 979 65.9
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1274.2 852 70.1
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1258.4 788 75.5
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1258.0 787 73.7
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1212.2 786 72.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 2.0e-311 1072.4 981 53.7
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.6e-310 1067.4 683 72.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 5.8e-298 1027.7 959 53.2
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.3e-286 989.9 697 68.6
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.9e-286 988.4 964 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.3e-278 962.6 959 50.8
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.3e-265 920.2 972 49.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.9e-265 918.3 563 75.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 3.0e-238 829.3 843 50.8
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.2e-210 737.6 402 82.8
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 4.5e-141 506.5 288 81.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.6e-138 498.0 412 60.4
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-123 447.6 343 63.0
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-117 428.7 373 59.5
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-107 395.2 215 86.0
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.7e-95 354.0 192 87.5
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.9e-92 344.4 202 75.7
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-91 342.0 275 60.7
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.9e-75 288.5 159 81.8
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.3e-75 287.3 214 65.0
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.1e-70 270.8 156 76.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.9e-67 261.9 683 29.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 5.6e-67 260.4 143 84.6
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-56 225.7 376 40.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-53 216.1 149 67.1
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.4e-47 193.4 952 24.4
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 5.6e-43 180.6 149 61.1
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.8e-42 177.6 94 85.1
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.6e-40 171.8 163 52.8
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.6e-37 162.5 95 82.1
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.1e-34 152.1 148 51.4
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 4.0e-33 147.9 92 72.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 6.9e-33 147.1 118 59.3
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 2.1e-29 135.6 88 69.3
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.6e-29 134.4 118 57.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 7.6e-24 117.1 183 37.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 6.7e-20 104.0 184 34.2
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 5.7e-19 100.9 119 45.4
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 6.9e-17 94.0 300 28.0
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 9.1e-17 93.6 71 62.0
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.0e-15 90.1 114 46.5
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 5.1e-12 77.8 47 78.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.7e-11 74.3 57 57.9
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 6.3e-10 70.9 76 50.0
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.4e-08 65.1 44 68.2
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.0e-07 63.5 48 64.6


User provided reference genes

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