Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 5.0e-151 537.7 270 100.0
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.0e-119 432.2 268 82.1
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.6e-117 426.4 268 81.7
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 1.3e-114 416.8 268 79.5
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.9e-113 412.9 270 78.9
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 3.2e-113 412.1 271 79.7
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 1.6e-112 409.8 270 78.9
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 3.6e-109 398.7 278 76.3
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 6.2e-109 397.9 272 76.5
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 3.1e-108 395.6 270 77.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 9.0e-108 394.0 273 75.8
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 3.4e-107 392.1 271 76.8
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 5.8e-107 391.3 269 75.8
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 7.6e-107 391.0 271 76.8
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 3.2e-105 385.6 305 68.2
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 9.3e-105 384.0 225 84.0
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.6e-104 383.3 254 76.8
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.6e-104 383.3 245 79.2
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 6.0e-104 381.3 273 74.4
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 6.0e-104 381.3 271 74.5
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 7.9e-104 380.9 219 84.5
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 7.9e-104 380.9 244 78.7
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.3e-103 379.4 274 72.3
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.9e-103 378.6 281 71.2
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 5.1e-103 378.3 275 73.5
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 3.3e-102 375.6 256 75.8
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 4.3e-102 375.2 270 71.5
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.7e-101 372.1 236 79.2
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 4.0e-100 368.6 242 77.7
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.2e-99 367.1 240 76.2
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.6e-99 365.9 271 73.4
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 4.5e-99 365.2 237 76.8
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 4.5e-99 365.2 238 75.6
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 7.6e-99 364.4 240 77.1
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.3e-98 363.6 240 77.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.3e-98 363.6 240 76.7
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.9e-98 362.5 219 82.6
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.4e-97 360.1 274 69.3
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 7.1e-97 357.8 288 66.7
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 9.3e-97 357.5 218 79.8
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 9.3e-97 357.5 275 68.0
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.6e-96 356.7 234 76.9
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 2.7e-96 355.9 271 68.6
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 7.9e-96 354.4 219 77.2
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 7.9e-96 354.4 219 77.2
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.0e-95 354.0 256 71.9
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.3e-95 353.6 219 77.2
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.8e-95 353.2 206 84.0
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 2.3e-95 352.8 236 75.8
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 3.0e-95 352.4 266 70.3
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 1.5e-94 350.1 208 84.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.5e-94 349.4 215 77.7
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 2.5e-94 349.4 203 83.3
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.3e-94 348.6 219 76.7
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 4.3e-94 348.6 256 69.5
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 5.7e-94 348.2 218 79.4
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 7.4e-94 347.8 228 76.3
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.6e-93 346.7 267 68.5
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 2.8e-93 345.9 246 71.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.8e-93 345.9 246 71.5
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 6.2e-93 344.7 216 77.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 8.2e-93 344.4 230 73.9
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 8.2e-93 344.4 215 77.7
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.1e-92 344.0 237 73.4
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.4e-92 343.6 215 80.0
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.8e-92 343.2 216 77.3
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.8e-92 343.2 215 80.0
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 3.1e-92 342.4 240 72.9
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 4.1e-92 342.0 212 81.6
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 9.0e-92 340.9 233 74.7
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.2e-91 340.5 218 78.9
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.0e-91 339.7 243 70.4
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 2.6e-91 339.3 282 65.6
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 2.6e-91 339.3 276 65.2
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 2.6e-91 339.3 273 63.7
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.6e-91 339.3 223 74.4
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 3.4e-91 339.0 218 78.4
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 7.6e-91 337.8 218 78.0
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.0e-90 337.4 236 72.5
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 1.3e-90 337.0 218 78.4
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.3e-90 337.0 208 76.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.7e-90 336.7 215 78.1
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.2e-90 336.3 277 66.1
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 1.4e-89 333.6 267 67.4
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 5.5e-89 331.6 271 66.1
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 5.5e-89 331.6 275 65.1
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 7.1e-89 331.3 222 71.6
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.1e-88 329.7 272 64.7
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 4.6e-88 328.6 273 66.7
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.0e-87 327.4 278 64.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 3.0e-87 325.9 269 65.8
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 3.0e-87 325.9 222 75.2
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.1e-87 325.1 270 64.8
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.1e-86 323.9 188 83.5
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.1e-86 323.9 209 78.5
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 1.9e-86 323.2 277 63.5
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.3e-86 322.4 205 78.0
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 7.4e-86 321.2 207 73.9
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 6.3e-85 318.2 263 66.5
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 8.2e-85 317.8 248 68.1
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 8.2e-85 317.8 213 74.2
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.1e-84 317.4 205 76.6
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.2e-83 313.9 213 73.7
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 4.5e-83 312.0 263 63.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 7.2e-81 304.7 228 66.2
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.4e-79 300.4 216 68.1
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 2.0e-78 296.6 244 64.3
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 2.7e-72 276.2 186 69.9
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 3.0e-71 272.7 206 68.9
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 3.1e-68 262.7 182 68.7
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 6.7e-63 245.0 179 64.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 4.5e-59 232.3 229 52.0
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.4e-52 210.7 132 77.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.5e-49 200.7 149 65.8
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.2e-48 197.6 114 85.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 1.4e-44 184.1 219 45.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 4.0e-39 166.0 160 52.5
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.1e-23 114.8 187 35.3
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 3.1e-23 113.2 79 72.2
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.9e-20 104.0 75 72.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.9e-17 94.0 56 78.6
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 4.7e-16 89.4 161 35.4
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 7.1e-12 75.5 115 42.6
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 1.7e-10 70.9 186 31.2
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 3.0e-10 70.1 232 28.0
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 3.9e-10 69.7 185 28.6
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 8.6e-10 68.6 183 26.2
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 1.5e-09 67.8 250 24.8
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 3.3e-09 66.6 230 25.2
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 4.3e-09 66.2 183 26.8
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 2.8e-08 63.5 264 24.6
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 3.6e-08 63.2 245 23.7
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 4.7e-08 62.8 186 27.4
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.1e-07 61.6 232 23.3
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.8e-07 60.8 208 26.4
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 3.1e-07 60.1 234 23.1
Nn2g10494 Nelumbo nucifera HOM05D002933 ORTHO05D007742 3.1e-07 60.1 83 39.8
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.1e-07 60.1 176 25.6
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 6.8e-07 58.9 230 23.9
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 6.8e-07 58.9 176 26.1
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 8.9e-07 58.5 248 23.4
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 8.9e-07 58.5 222 23.9
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 8.9e-07 58.5 203 24.6
RcHm_v2.0_Chr1g0365771 Rosa chinensis HOM05D002933 ORTHO05D009221 1.2e-06 58.2 227 23.3
Thecc.10G052300 Theobroma cacao HOM05D002933 ORTHO05D009221 1.2e-06 58.2 229 22.3
FAN03G0743 Fragaria x ananassa HOM05D002933 ORTHO05D009221 1.5e-06 57.8 227 23.3
FAN06G0728 Fragaria x ananassa HOM05D002933 ORTHO05D009221 1.5e-06 57.8 227 23.3
COL.COLO4_14921 Corchorus olitorius HOM05D002933 ORTHO05D009221 2.0e-06 57.4 237 22.4
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 2.0e-06 57.4 232 22.4
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 4.4e-06 56.2 178 23.6
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 5.8e-06 55.8 176 23.3
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 5.8e-06 55.8 229 21.8
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 5.8e-06 55.8 180 25.6
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 7.6e-06 55.5 251 22.7
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 9.9e-06 55.1 250 22.8


User provided reference genes

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