Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 5.3e-173 610.9 305 100.0
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 7.9e-145 517.3 296 86.8
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.6e-137 493.0 307 80.5
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 6.7e-136 487.6 285 82.1
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.2e-135 486.9 303 80.9
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.5e-135 486.5 303 79.9
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 5.7e-135 484.6 306 79.1
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 7.5e-135 484.2 303 79.2
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.7e-134 483.0 303 80.9
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 2.2e-134 482.6 304 80.3
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 4.8e-134 481.5 301 79.1
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 6.3e-134 481.1 309 78.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 6.3e-134 481.1 303 78.9
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.1e-133 480.3 303 78.5
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.4e-133 479.9 296 81.8
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 3.1e-133 478.8 305 79.3
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 3.1e-133 478.8 303 78.2
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.9e-131 472.2 301 78.4
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 8.5e-131 470.7 281 81.9
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.5e-130 469.2 280 81.4
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 4.2e-130 468.4 325 73.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.2e-130 468.4 284 80.6
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.6e-129 466.5 303 77.6
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 6.1e-129 464.5 305 76.1
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 6.1e-129 464.5 269 84.8
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 3.4e-127 458.8 306 75.8
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 4.4e-127 458.4 279 79.2
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 4.4e-127 458.4 295 76.6
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 5.7e-127 458.0 298 76.8
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 5.7e-127 458.0 298 76.8
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 5.7e-127 458.0 304 74.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 3.7e-126 455.3 306 75.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 3.7e-126 455.3 269 82.9
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 3.7e-126 455.3 277 80.9
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.8e-126 454.9 291 78.4
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 8.3e-126 454.1 283 77.7
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.1e-125 453.8 283 76.7
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.4e-125 453.4 279 78.5
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.4e-125 452.6 280 75.7
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 5.4e-125 451.4 287 77.0
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 9.1e-125 450.7 277 77.3
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 9.1e-125 450.7 305 73.8
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.2e-124 450.3 280 77.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.2e-124 450.3 269 81.8
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.6e-124 449.9 283 77.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.0e-124 449.5 322 71.4
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.0e-124 449.5 297 76.1
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 2.0e-124 449.5 278 77.3
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 3.5e-124 448.7 321 72.9
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.0e-123 447.2 285 76.1
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.3e-123 446.8 305 72.5
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.3e-123 446.8 280 77.5
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.7e-123 446.4 308 71.8
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.8e-123 445.3 296 73.6
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.5e-122 443.4 300 72.7
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 7.2e-122 441.0 286 78.0
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.6e-121 439.9 299 73.2
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.7e-121 439.1 302 72.2
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 3.6e-121 438.7 295 73.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.0e-120 437.2 283 75.6
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 1.0e-120 437.2 305 71.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 3.0e-120 435.6 317 70.3
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 4.0e-120 435.3 285 74.4
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.5e-119 433.3 249 85.9
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.0e-119 433.0 357 65.5
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 4.9e-118 428.3 316 69.0
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 4.1e-117 425.2 280 73.6
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 5.4e-117 424.9 298 69.1
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 9.2e-117 424.1 305 69.2
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.6e-116 423.3 301 68.4
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.0e-116 422.9 304 68.4
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.0e-116 422.9 301 68.8
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.7e-116 422.5 278 73.0
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 5.9e-116 421.4 292 69.5
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 5.9e-116 421.4 313 69.3
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.0e-115 420.6 301 68.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.3e-115 420.2 298 73.5
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.8e-115 418.7 311 69.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.5e-114 416.8 285 71.2
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 5.6e-114 414.8 302 68.2
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.1e-113 412.9 285 70.9
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 6.1e-113 411.4 284 70.8
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 5.2e-112 408.3 286 71.0
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.0e-111 406.4 307 68.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 9.8e-111 404.1 307 67.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 8.3e-110 401.0 263 71.5
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.4e-109 400.2 312 67.9
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.8e-109 399.8 281 69.8
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 2.0e-108 396.4 259 73.4
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.3e-107 392.9 286 72.0
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 3.0e-107 392.5 279 71.3
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 3.0e-107 392.5 305 64.9
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.1e-106 390.6 332 62.7
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.1e-106 390.6 332 62.7
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.4e-103 378.6 280 67.1
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.7e-102 376.7 284 66.2
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 2.4e-101 372.9 332 61.1
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 6.0e-100 368.2 245 71.4
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 3.0e-99 365.9 271 69.0
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 5.0e-99 365.2 258 69.0
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 5.0e-99 365.2 263 71.5
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 3.3e-98 362.5 258 69.0
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 4.7e-97 358.6 273 63.7
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.4e-96 357.1 251 70.5
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.4e-96 357.1 249 72.7
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 9.8e-95 350.9 261 66.3
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.1e-93 345.5 265 69.4
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 5.4e-93 345.1 258 65.9
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 6.6e-91 338.2 249 65.5
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 9.5e-90 334.3 203 79.8
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.1e-88 330.9 273 59.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 3.1e-88 329.3 214 75.2
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 4.0e-88 328.9 249 63.9
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.5e-87 327.0 316 59.5
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 5.4e-85 318.5 270 60.7
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.2e-84 317.4 256 65.6
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 5.1e-83 312.0 226 66.8
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.5e-82 310.5 193 78.2
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 6.9e-80 301.6 249 60.6
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.3e-73 280.8 219 63.9
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 1.2e-60 237.7 282 44.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 7.9e-60 235.0 301 45.5
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.3e-59 234.2 255 50.6
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 3.9e-51 206.1 121 81.8
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.8e-48 197.2 122 79.5
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.1e-45 188.0 121 75.2
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 3.2e-45 186.4 270 41.9
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.7e-44 183.3 155 59.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 5.1e-43 179.1 258 40.7
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.3e-38 164.5 118 66.1
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-36 156.4 142 57.0
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 2.3e-35 153.7 88 83.0
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 2.5e-29 133.7 83 72.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.8e-27 127.5 91 70.3
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 3.1e-24 116.7 103 59.2
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.7e-22 110.9 287 27.9
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 2.9e-22 110.2 75 68.0
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 9.7e-18 95.1 317 26.2
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.7e-17 94.4 154 39.6
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 8.2e-17 92.0 262 27.9
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 8.2e-17 92.0 303 29.0
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 4.1e-16 89.7 103 48.5
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 7.0e-16 89.0 204 28.4
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 9.1e-16 88.6 61 63.9
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 5.9e-15 85.9 68 60.3
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 3.2e-13 80.1 87 46.0
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 5.5e-13 79.3 81 50.6
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 9.4e-13 78.6 51 68.6
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 3.0e-11 73.6 47 68.1
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 4.0e-11 73.2 310 24.2
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 5.2e-11 72.8 310 24.2
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 7.5e-10 68.9 52 61.5
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.8e-08 64.3 41 73.2
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 7.7e-07 58.9 232 22.4


User provided reference genes

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