Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.3e-185 652.1 344 100.0
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 9.7e-115 417.5 335 70.7
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.7e-111 406.8 336 69.0
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 2.2e-111 406.4 333 70.0
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 2.2e-111 406.4 334 69.5
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 3.8e-111 405.6 329 68.1
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 5.0e-111 405.2 334 69.2
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 6.5e-111 404.8 330 68.8
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 6.5e-111 404.8 330 70.9
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.1e-110 404.1 327 68.8
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.9e-109 397.9 342 68.7
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 1.4e-108 397.1 328 67.1
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 1.8e-108 396.7 329 68.4
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 2.3e-108 396.4 329 68.4
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 3.0e-108 396.0 326 69.9
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 3.0e-108 396.0 326 69.9
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 3.9e-108 395.6 337 68.0
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 5.1e-108 395.2 328 68.9
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 6.7e-108 394.8 327 66.7
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 1.5e-107 393.7 280 76.4
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.5e-107 393.7 327 66.7
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 1.5e-107 393.7 325 68.3
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.0e-107 393.3 338 66.0
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 2.5e-107 392.9 326 69.3
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.5e-107 392.9 327 66.7
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 4.3e-107 392.1 337 68.2
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.3e-106 390.6 329 67.8
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 1.7e-106 390.2 331 69.2
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 2.2e-106 389.8 327 69.1
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 2.2e-106 389.8 327 69.1
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 8.2e-106 387.9 336 67.6
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 1.1e-105 387.5 338 67.2
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 9.1e-105 384.4 335 67.5
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 1.2e-104 384.0 269 77.3
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 5.9e-104 381.7 328 68.0
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 1.0e-103 380.9 275 76.4
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.9e-103 379.4 328 68.3
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 2.9e-103 379.4 328 65.2
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.9e-103 379.4 328 65.2
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 5.0e-103 378.6 287 71.8
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 6.5e-103 378.3 337 63.8
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 1.9e-102 376.7 328 67.7
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 9.4e-102 374.4 326 65.3
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.2e-101 374.0 323 64.7
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 2.1e-101 373.2 335 65.4
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 2.7e-101 372.9 254 78.3
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 2.7e-101 372.9 331 65.3
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.7e-101 372.9 344 64.0
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 3.6e-101 372.5 344 63.1
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.6e-101 372.5 328 64.3
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.1e-101 371.7 328 64.3
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.0e-100 370.9 321 65.1
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 1.4e-100 370.5 322 62.7
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 1.4e-100 370.5 295 71.2
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 1.8e-100 370.2 348 63.8
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.3e-100 369.8 324 63.3
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 2.3e-100 369.8 327 65.7
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 3.9e-100 369.0 223 83.4
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 3.9e-100 369.0 343 62.1
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 5.1e-100 368.6 340 60.9
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 6.7e-100 368.2 329 65.3
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 6.7e-100 368.2 324 65.7
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 8.8e-100 367.9 327 64.5
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 8.8e-100 367.9 277 72.2
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.7e-98 363.6 322 64.6
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 1.1e-97 360.9 328 61.3
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.1e-97 360.9 326 63.5
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 1.8e-97 360.1 338 65.4
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 3.1e-97 359.4 282 69.1
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 3.1e-97 359.4 230 79.6
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 4.1e-97 359.0 321 63.2
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 5.3e-97 358.6 210 86.7
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 9.1e-97 357.8 324 62.0
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.6e-96 357.1 300 67.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 4.5e-96 355.5 325 63.7
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 5.0e-95 352.1 298 67.4
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 1.1e-94 350.9 327 61.2
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 6.1e-93 345.1 199 88.4
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 1.4e-92 344.0 210 85.7
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.4e-92 344.0 264 70.5
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 2.3e-92 343.2 291 65.6
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 5.2e-92 342.0 326 60.7
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 4.4e-91 339.0 326 60.4
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 5.7e-91 338.6 325 62.5
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 2.8e-90 336.3 328 61.3
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 1.8e-89 333.6 326 61.3
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 4.5e-88 328.9 336 58.9
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 1.3e-87 327.4 342 57.9
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.9e-87 326.2 267 67.0
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 5.0e-87 325.5 257 68.5
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 8.5e-87 324.7 267 67.0
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 5.5e-86 322.0 252 67.5
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 2.1e-85 320.1 314 58.9
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.6e-83 313.2 374 51.9
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 5.7e-83 312.0 266 65.4
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 3.7e-82 309.3 257 65.8
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 4.8e-82 308.9 425 47.3
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 3.1e-81 306.2 430 46.3
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 3.1e-81 306.2 219 73.1
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 4.1e-81 305.8 224 71.4
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 6.5e-79 298.5 229 72.9
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 4.2e-78 295.8 314 58.0
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 2.7e-77 293.1 250 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 4.0e-76 289.3 231 66.2
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.5e-70 270.8 321 54.5
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.8e-68 261.9 157 86.0
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 3.4e-67 259.6 261 56.3
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 1.8e-65 253.8 368 50.3
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 3.2e-65 253.1 262 58.4
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 3.1e-60 236.5 220 56.8
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 5.2e-60 235.7 216 57.9
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 1.7e-58 230.7 217 59.0
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 5.0e-55 219.2 128 87.5
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 6.6e-55 218.8 133 83.5
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 8.6e-55 218.4 214 56.5
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 7.3e-54 215.3 138 79.7
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.3e-52 210.3 218 52.3
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.1e-48 197.2 138 73.9
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.5e-43 181.0 109 85.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.2e-40 171.4 102 82.4
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.7e-32 143.7 215 36.7
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.1e-30 138.3 157 53.5
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.1e-25 121.7 82 80.5
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 1.2e-24 118.2 66 95.5
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 7.9e-24 115.5 90 68.9
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-19 101.3 162 38.3
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 7.1e-17 92.4 64 70.3
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.5e-16 90.1 151 45.0
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 1.4e-12 78.2 41 97.6
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 9.0e-12 75.5 38 97.4
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 7.1e-09 65.9 36 88.9
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 5.7e-06 56.2 210 25.2


User provided reference genes

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