Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.4e-273 944.9 466 100.0
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.1e-233 811.2 467 83.7
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.1e-222 776.5 459 81.3
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 7.2e-222 773.9 462 80.5
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.0e-220 770.0 460 79.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 9.7e-219 763.5 455 80.2
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.1e-217 758.4 460 79.6
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 2.6e-216 755.4 463 79.5
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 7.7e-216 753.8 462 79.2
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.9e-215 751.9 454 79.5
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 5.0e-215 751.1 466 78.5
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 6.5e-215 750.7 467 78.6
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.5e-215 750.7 456 78.5
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.1e-214 750.0 447 80.5
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 3.2e-214 748.4 424 84.2
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 7.2e-214 747.3 463 78.2
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.2e-213 746.5 608 64.1
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.7e-213 744.6 460 79.6
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 4.7e-213 744.6 460 79.6
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 6.1e-213 744.2 461 77.4
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 5.2e-212 741.1 463 75.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 6.8e-212 740.7 459 78.0
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.5e-211 739.6 454 78.0
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.0e-211 739.2 456 76.5
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 2.6e-211 738.8 459 77.6
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 3.4e-211 738.4 466 77.3
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 9.7e-211 736.9 455 77.1
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.7e-210 736.1 459 77.1
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 2.2e-210 735.7 462 77.1
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.8e-210 735.3 459 77.3
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 6.3e-210 734.2 459 77.3
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 6.3e-210 734.2 461 75.7
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.1e-209 733.4 449 78.8
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.4e-209 733.0 456 75.9
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 3.1e-209 731.9 460 77.6
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 3.1e-209 731.9 462 75.1
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 3.1e-209 731.9 449 78.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 4.1e-209 731.5 455 76.5
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 4.1e-209 731.5 453 77.9
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.2e-208 729.9 455 76.5
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 1.6e-208 729.6 443 77.7
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.6e-208 729.6 442 79.0
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.0e-208 729.2 460 76.3
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 2.7e-208 728.8 485 74.0
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 3.5e-208 728.4 455 77.4
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 5.9e-208 727.6 463 75.4
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 7.7e-208 727.2 462 75.5
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.7e-207 726.1 476 73.3
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 2.2e-207 725.7 457 75.9
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.9e-207 725.3 456 75.4
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 3.8e-207 724.9 485 72.2
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 3.8e-207 724.9 459 74.7
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.5e-207 724.2 485 72.2
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.5e-206 723.0 460 75.0
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 3.2e-206 721.8 455 75.2
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 9.4e-206 720.3 455 74.9
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 9.4e-206 720.3 461 73.8
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.2e-205 719.9 453 75.7
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.2e-205 719.9 461 74.8
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 1.2e-205 719.9 454 76.0
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 453 75.5
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 2.7e-205 718.8 461 74.0
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.6e-205 718.4 455 76.9
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.6e-205 718.4 453 75.3
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 6.1e-205 717.6 462 74.5
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 6.1e-205 717.6 481 73.0
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.0e-204 716.8 493 73.0
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.0e-204 716.8 466 74.2
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 2.3e-204 715.7 456 74.8
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 5.2e-204 714.5 462 75.3
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 8.8e-204 713.8 459 74.1
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 2.0e-203 712.6 466 73.8
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 3.4e-203 711.8 456 75.7
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 7.5e-203 710.7 463 74.1
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.3e-202 709.9 502 68.9
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.3e-202 707.6 462 73.6
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 8.3e-202 707.2 479 70.8
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 5.4e-201 704.5 449 75.5
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-200 703.4 466 72.7
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 5.9e-200 701.0 463 74.3
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 7.7e-200 700.7 464 73.1
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.3e-199 699.1 470 72.3
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 3.8e-199 698.4 457 75.1
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 5.0e-199 698.0 450 74.9
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 5.5e-198 694.5 462 72.9
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 4.7e-197 691.4 549 63.4
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.0e-196 690.3 456 73.2
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.0e-196 688.3 459 73.4
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 2.0e-195 686.0 514 66.3
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 3.4e-195 685.3 424 77.6
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 8.6e-191 670.6 458 71.6
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.1e-190 670.2 441 73.9
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 5.6e-190 667.9 456 71.7
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 1.0e-188 663.7 459 71.5
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.4e-188 663.3 424 74.5
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.8e-188 662.9 454 68.5
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.2e-176 623.6 378 78.3
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 3.9e-175 618.6 464 64.9
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.1e-172 609.0 360 80.8
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 4.1e-169 598.6 365 77.8
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 7.1e-169 597.8 374 75.7
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 5.2e-164 581.6 371 73.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.5e-158 562.8 460 62.4
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.8e-156 556.6 394 70.1
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.1e-152 543.1 434 63.8
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.3e-149 533.9 460 58.5
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 4.0e-148 528.9 478 58.2
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.2e-147 527.3 450 58.9
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 9.3e-145 517.7 374 68.7
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 3.7e-141 505.8 445 59.1
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 2.5e-137 493.0 465 55.1
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 3.1e-132 476.1 464 54.3
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 5.3e-132 475.3 283 77.4
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 3.4e-123 446.0 280 73.2
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.1e-121 441.0 270 75.2
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.3e-111 406.8 252 73.0
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 5.5e-105 385.6 254 72.8
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 2.2e-101 373.6 430 48.1
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 4.8e-101 372.5 525 43.2
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.5e-97 360.9 249 73.1
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 5.7e-94 349.0 542 41.0
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 4.2e-89 332.8 457 40.0
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.8e-82 309.7 241 66.4
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 3.8e-82 309.7 249 65.1
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 3.0e-79 300.1 242 64.9
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 6.6e-74 282.3 202 71.8
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 7.3e-73 278.9 184 77.2
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 4.9e-69 266.2 164 73.8
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.7e-64 249.6 149 76.5
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 2.0e-62 244.2 242 56.6
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.4e-62 243.0 183 64.5
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.5e-57 227.3 152 76.3
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.2e-43 181.8 116 75.9
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.1e-43 181.0 118 76.3
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.7e-42 177.9 121 69.4
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.9e-41 174.5 103 84.5
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.3e-40 171.8 108 80.6
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.1e-39 167.2 107 79.4
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 9.9e-38 162.2 106 76.4
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.4e-36 156.4 337 32.6
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 6.6e-34 149.4 91 80.2
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 4.0e-31 140.2 88 72.7
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.8e-29 133.7 90 65.6
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.8e-23 114.8 71 84.5
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.8e-23 114.8 71 84.5
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.8e-23 114.8 71 84.5
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 6.9e-23 112.8 103 59.2
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.8e-18 98.2 97 54.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 2.3e-18 97.8 66 69.7
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 7.4e-17 92.8 68 66.2
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 2.4e-15 87.8 44 93.2
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.0e-13 82.4 307 27.0
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.1e-11 73.2 56 66.1
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 3.0e-10 70.9 42 76.2
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 1.9e-09 68.2 43 74.4
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.3e-09 67.0 37 86.5
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 4.3e-09 67.0 37 86.5
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.3e-08 65.5 37 83.8
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 2.2e-08 64.7 38 76.3
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 2.2e-08 64.7 429 24.2
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.8e-08 64.3 237 29.5
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 2.8e-08 64.3 237 29.5
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.8e-08 64.3 44 65.9
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 4.8e-08 63.5 213 31.9
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 4.8e-08 63.5 237 29.5
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 6.3e-08 63.2 67 53.7
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 8.2e-08 62.8 236 28.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 8.2e-08 62.8 236 28.8
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 8.2e-08 62.8 236 28.8
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.1e-07 62.4 238 29.4
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 1.1e-07 62.4 237 29.1
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.8e-07 61.6 231 28.6
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 4.1e-07 60.5 65 53.8
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 5.3e-07 60.1 236 29.7
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 6.9e-07 59.7 230 27.8
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 6.9e-07 59.7 238 29.0
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.2e-06 58.9 237 27.8
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 2.0e-06 58.2 238 28.2
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 2.6e-06 57.8 296 26.4
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 5.9e-06 56.6 179 30.7
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 7.7e-06 56.2 236 28.0


User provided reference genes

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